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Table 1 Summary of the GO terms over-represented in the lists of gene up () or down () regulated post transfer from fructose to SEB for 6 h

From: RNAseq reveals hydrophobins that are involved in the adaptation of Aspergillus nidulans to lignocellulose

GO term Description p value Class Reg.
Alternative carbon usage and autophagy
 GO:0019439 Aromatic compound catabolic process 0.002559 BP
 GO:0009083 Branched chain family amino acid catabolic process 0.000445 BP
 GO:0033539 Fatty acid beta-oxidation using acyl-CoA dehydrogenase 0.004303 BP
 GO:0045493 Xylan catabolic process 0.004047 BP
 GO:0044247 Cellular polysaccharide catabolic process 0.001386 BP
 GO:0004553 Hydrolase activity, hydrolyzing O-glycosyl compounds 0.000516 MF
 GO:0034727 Piecemeal microautophagy of nucleus 3.8E−05 BP
 GO:0000407 Pre-autophagosomal structure 0.004047 CC
Sporulation
 GO:0043938 Positive regulation of sporulation 0.000876 BP
 GO:2000243 Positive regulation of reproductive process 0.004954 BP
 GO:0045597 Positive regulation of cell differentiation 0.003258 BP
 GO:0034305 Regulation of asexual sporulation 0.00405 BP
 GO:0048315 Conidium formation 0.001015 BP
 GO:0019953 Sexual reproduction 0.005001 BP
Signal transduction and transcriptional regulation
 GO:0045859 Regulation of protein kinase activity 0.002559 BP
 GO:0004672 Protein kinase activity 4.65E−05 MF
 GO:0006355 Regulation of transcription, DNA-dependent 0.000713 BP
 GO:0005667 Transcription factor complex 0.005477 CC
 GO:0030528 Transcription regulator activity 1.47E−06 MF
 GO:0003700 Sequence-specific DNA binding transcription factor activity 1.39E−05 MF
 GO:0000077 DNA damage checkpoint 0.000601 BP
 GO:0042770 Signal transduction in response to DNA damage 0.000232 BP
Protein translation
 GO:0000027 Ribosomal large subunit assembly 1.43E−08 BP
 GO:0005763 Mitochondrial small ribosomal subunit 1.35E−05 CC
 GO:0030687 Preribosome, large subunit precursor 4.87E−07 CC
 GO:0022627 Cytosolic small ribosomal subunit 2.89E−06 CC
 GO:0022625 Cytosolic large ribosomal subunit 4.15E−05 CC
 GO:0003735 Structural constituent of ribosome 5.37E−25 MF
GO:0043614 Multi-eIF complex 0.004466 CC
Respiration
 GO:0006096 Glycolysis 0.00425 BP
 GO:0015986 ATP synthesis coupled proton transport 0.00231 BP
 GO:0033617 Mitochondrial respiratory chain complex IV assembly 0.004466 BP
 GO:0042775 Mitochondrial ATP synthesis coupled electron transport 0.006022 BP
 GO:0033615 Mitochondrial proton-transporting ATP synthase complex assembly 0.001028 BP
 GO:0000275 Mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) 0.004077 CC
 GO:0005751 Mitochondrial respiratory chain complex IV 0.0135 CC
 GO:0045254 Pyruvate dehydrogenase complex 0.004077 CC
 GO:0016491 Oxidoreductase activity 2.57E−06 MF
  1. For the full list refer to Additional file 6: File S2
  2. BP, MF, and CC denote biological process, molecular function, and cellular component, respectively