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Table 2 Summary of the GO terms over-represented in the lists of gene up () or down () regulated post transfer from fructose to SEB for 12 h

From: RNAseq reveals hydrophobins that are involved in the adaptation of Aspergillus nidulans to lignocellulose

GO term Description p-value Class Reg.
Alternative carbon usage and autophagy
 GO:0034727 Piecemeal microautophagy of nucleus 0.00092 BP
 GO:0033539 Fatty acid beta-oxidation using acyl-CoA dehydrogenase 0.002012 BP
 GO:0009083 Branched chain family amino acid catabolic process 0.000123 BP
 GO:0019439 Aromatic compound catabolic process 0.00059 BP
 GO:0043941 Positive regulation of sexual sporulation resulting in formation of a cellular spore 0.001234 BP
 GO:0075307 Positive regulation of conidium formation 0.002775 BP
Signal transduction and transcriptional regulation
 GO:0031667 Response to nutrient levels 0.001154 BP
 GO:0005667 Transcription factor complex 0.002173 CC
 GO:0044212 Transcription regulatory region DNA binding 5.56E−05 MF
 GO:0010843 Promoter binding 5.56E−05 MF
 GO:0030528 Transcription regulator activity 4.54E−09 MF
 GO:0003700 Sequence-specific DNA binding transcription factor activity 6.17E−07 MF
 GO:0006468 Protein phosphorylation 0.002164 BP
 GO:0004674 Protein serine/threonine kinase activity 0.000797 MF
 GO:0042770 Signal transduction in response to DNA damage 0.00092 BP
 GO:0000077 DNA damage checkpoint 0.002455 BP
Protein translation
 GO:0000028 Ribosomal small subunit assembly 0.002859 BP
 GO:0000027 Ribosomal large subunit assembly 9.06E−07 BP
 GO:0005763 Mitochondrial small ribosomal subunit 4.47E−05 CC
 GO:0022627 Cytosolic small ribosomal subunit 2.43E−06 CC
 GO:0022625 Cytosolic large ribosomal subunit 0.000133 CC
 GO:0005762 Mitochondrial large ribosomal subunit 6E−08 CC
 GO:0003735 Structural constituent of ribosome 9.5E−25 MF
 GO:0006007 Glucose catabolic process 0.000946 BP
 GO:0006099 Tricarboxylic acid cycle 0.004933 BP
 GO:0006119 Oxidative phosphorylation 0.000164 BP
 GO:0016491 Oxidoreductase activity 4.81E−05 MF
 GO:0045254 Pyruvate dehydrogenase complex 0.006285 CC
 GO:0015986 ATP synthesis coupled proton transport 0.005186 BP
 GO:0033617 Mitochondrial respiratory chain complex IV assembly 0.008028 BP
 GO:0005746 Mitochondrial respiratory chain 0.00779 CC
 GO:0000275 Mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) 0.006285 CC
  1. For the full list refer to Additional file 7: File S3
  2. BP, MF, and CC denote biological process, molecular function, and cellular component, respectively