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Table 3 Twenty most abundant CAZymes in the proteome of P. radiata

From: Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose

Gene ID Predicted function Protein abundances Average abundance on days 7–42 Transcripts up-regulated on wood
Cultivation time (days)
0 7 14 21 28 42
Plus.g1419 AA2: MnP1-Long 0.00 8.33 3.86 3.76 3.08 3.81 4.57 x
Plus.g11059 AA2: LiP3 0.00 5.37 4.32 2.58 1.10 0.70 2.81 x
Minus.g4265 AA5_1; glyoxal oxidase 0.00 2.32 1.25 0.75 0.88 2.10 1.46 x
Plus.g4813 AA3: GMC oxidoreductase 0.00 0.09 0.44 0.64 1.21 1.65 0.81 x
Plus.g10562 AA2: MnP2-Long 0.00 0.45 0.25 0.41 0.65 1.30 0.61 x
Minus.g11349 AA3: GMC oxidoreductase 0.00 0.79 0.61 0.46 0.39 0.37 0.52 x
Minus.g6827 AA2: LiP2 0.00 1.03 1.08 0.26 0.01 0.00 0.48 x
Minus.g7380 CE1 0.00 0.39 0.28 0.33 0.30 0.49 0.36 x
Plus.g453 AA2: MnP3-short 0.00 1.13 0.40 0.10 0.06 0.06 0.35 x
Minus.g2306 GH3 2.80 0.33 0.38 0.35 0.27 0.29 0.32  
Minus.g3073 AA2: LiP1 0.00 0.91 0.32 0.10 0.00 0.00 0.27 x
Minus.g5595 GH7 0.00 0.16 0.54 0.34 0.18 0.04 0.25 x
Plus.g8163 GH7 0.00 0.01 0.05 0.13 0.39 0.53 0.22 x
Minus.g6399 GH3 0.01 0.11 0.15 0.20 0.25 0.40 0.22 x
Plus.g4342 GH6 0.00 0.20 0.32 0.22 0.23 0.10 0.22 x
Plus.g637 CE16 0.00 0.18 0.13 0.15 0.27 0.33 0.21 x
Minus.g12190 GH10 0.00 0.24 0.23 0.21 0.22 0.08 0.19 x
Minus.g11677 GH28 0.76 0.53 0.16 0.04 0.02 0.01 0.15  
Plus.g7451 GH5 0.00 0.09 0.22 0.16 0.18 0.09 0.15 x
Plus.g9628 AA8-AA3_1: CDH 0.00 0.18 0.24 0.10 0.11 0.04 0.14 x
  Proportion (%) of total proteome 3.57 22.84 15.22 11.27 9.81 12.38 14.30  
  1. Gene ID corresponds to annotated gene locus on the P. radiata genome assembly. Protein abundances are calculated based on mass spectrometric signal intensity values per each time point. Up-regulated transcripts refer to transcripts with significantly higher level of expression (p < 0.05 and log2-fold change ≥1) on wood as compared to the malt extract cultivations at both time points
  2. MnP manganese peroxidase; LiP lignin peroxidase; CE carbohydrate esterase; CDH cellobiose dehydrogenase; GH glycoside hydrolase; GLOX glyoxal oxidase