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Table 1 Summary of the S. fibuligera KPH12 and KJJ81 nuclear genome assembly and annotation

From: Whole-genome de novo sequencing, combined with RNA-Seq analysis, reveals unique genome and physiological features of the amylolytic yeast Saccharomycopsis fibuligera and its interspecies hybrid

 

KPH12

KJJ81

Scaffolds (no.)

7

14

Total length (bp)a

19,663,301

38,557,753

GC content (%)

38.24

38.54

Protein-coding gene models (no.)

6155

12,185

 Unique gene models (no.)

6028

11,966

 Genes with isoforms (no.)

127

219

 Supported by RNA-Seq (no.)

6154

12,184

 Annotated (no.)

5435

10,810

Average gene length (bp)

1788

1782

Total length of gene models (Mb)

11.00

21.72

Exons

 No. of exons

7710

15,067

 No. of average exons per gene

1.25

1.23

 Average exon length (bp)

1384

1402

Introns

 No. of introns

1555

2882

 No. of average introns per gene

0.25

0.23

 Average intron length (bp)

213

205

Non-coding RNAs (no.)

 tRNA

327

506

 rRNAs

452

462

Average non-coding RNA length (bp)

 tRNA

83

84

 rRNAs

464

463

Transposable element fragments (no.)

 Retrotransposons

1483

2691

 DNA transposons

21

186

Mitochondrial genome

 Total length (bp)

67,427

67,516

 GC content (%)

24.93

24.93

  1. aTotal length of scaffolds after extension of the telomere region