Skip to main content

Table 1 Summary of the S. fibuligera KPH12 and KJJ81 nuclear genome assembly and annotation

From: Whole-genome de novo sequencing, combined with RNA-Seq analysis, reveals unique genome and physiological features of the amylolytic yeast Saccharomycopsis fibuligera and its interspecies hybrid

  KPH12 KJJ81
Scaffolds (no.) 7 14
Total length (bp)a 19,663,301 38,557,753
GC content (%) 38.24 38.54
Protein-coding gene models (no.) 6155 12,185
 Unique gene models (no.) 6028 11,966
 Genes with isoforms (no.) 127 219
 Supported by RNA-Seq (no.) 6154 12,184
 Annotated (no.) 5435 10,810
Average gene length (bp) 1788 1782
Total length of gene models (Mb) 11.00 21.72
Exons
 No. of exons 7710 15,067
 No. of average exons per gene 1.25 1.23
 Average exon length (bp) 1384 1402
Introns
 No. of introns 1555 2882
 No. of average introns per gene 0.25 0.23
 Average intron length (bp) 213 205
Non-coding RNAs (no.)
 tRNA 327 506
 rRNAs 452 462
Average non-coding RNA length (bp)
 tRNA 83 84
 rRNAs 464 463
Transposable element fragments (no.)
 Retrotransposons 1483 2691
 DNA transposons 21 186
Mitochondrial genome
 Total length (bp) 67,427 67,516
 GC content (%) 24.93 24.93
  1. aTotal length of scaffolds after extension of the telomere region