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Table 5 Comparison of the previously reconstructed models [21] with the new models produced by CoReCo in this article

From: Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

CoReCo model T. reesei S. cerevisiae Average of all modelsa
  Pitkänen [21] (%) This article (%) Pitkänen [21] (%) This article (%) Pitkänen 21] (%) This article (%)
Dead end reactions 58 44 61 44 59 44
Dead end metabolites 68 59 70 58 69 58
Reactions added during the gap-filling step 37 20 35 22 39 21
Biomass components produced 7 100 7 100 7 89
Biomass components produced* 98* 100 100* 100 91* 89
Biomass components produced with stoichiometrically unrealistic yield 98* 0 64* 0 85* 0
  1. * When eight extra compounds were added as a source metabolites into the model simulations
  2. a The obligate intracellular parasite Encephalitozoon cuniculi has been excluded from the averages