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Fig. 6 | Biotechnology for Biofuels

Fig. 6

From: Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype

Fig. 6

Comparative analysis of key carbon metabolic pathways between C. cryptica and T. pseudonana. Different colored boxes denote subcellular location of a given enzyme based on bioinformatic targeting predictions. Number within the box indicates how many enzyme copies are targeted to that location. Numbers to the right of boxes are total gene copy number found in the genome. Question marks indicate weak targeting and/or inconsistencies between targeting prediction programs. Superscript numbers on enzymes indicate the number of genes found with partial sequence in C. cryptica at the N-terminus, thereby not containing targeting prediction. Red numbers are methylated genes. In the case of MGAT or DGTT, one of the four ER predicted genes is methylated. AAK14816-like putative glycerol-3-phosphate acyltransferase, ACC acetyl-CoA carboxylase, AGPAT 1-acyl-glycerol-3-phosphate acyltransferase, BGS 1,3 β-glucan synthase, DGAT diacylglycerol acyltransferase, DGTT diacylglycerol acyltransferase type 2, ENO enolase, ENR enoyl-ACP reductase, FBA fructose bisphosphate aldolase, FBP fructose 1,6 bisphosphatase, GAPDH glyceraldehyde 3-phosphate dehydrogenase, GLK glucokinase, GPI glucose-6-phosphate isomerase, GPAT glycerol-3-phosphate acyltransferase, HD 3-hydroxyacyl-ACP dehydratase, KAR 3-ketoacyl-ACP reductase, KAS 3-ketoacyl-ACP synthase, LCLAT1 lysocardiolipin acyltransferase 1, LPLAT lysophospholipid acyltransferase, MAT malonyl-CoA-ACP transacylase, MDH malate dehydrogenase, ME malic enzyme, MGAT monoacylglycerol acyltransferase, PAP phosphatidic acid phosphatase, PYC pyruvate carboxylase, PDRP pyruvate phosphate dikinase regulatory protein, PEPC phosphoenolpyruvate carboxylase, PEPCK phosphoenolpyruvate carboxykinase, PEPS phosphoenolpyruvate synthase, PFK phosphofructokinase, PGAM phosphoglycerate mutase, PGK phosphoglycerate kinase, PGM phosphoglucomutase, PK pyruvate kinase, PPDK pyruvate phosphate dikinase, TPI triose phosphate isomerase, UAP UDP-N-acetylglucosamine pyrophosphorylase, UGP UTP-glucose-1-phosphate uridylyltransferase

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