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Table 1 Genomic features in Cyclotella cryptica and Thalassiosira pseudonana

From: Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype

Statistics

C. cryptica

T. pseudonana

Cell size

8 × 10 μm

 

4 × 5 μm

Nuclear genome size

161.7 Mbp (GC 43%)

 

31 Mbp (GC 47%)

Repeatome (%)

53

 

2

 Classified repeats (%)

13

 

ND

 Unclassified repeats (%)

40

 

ND

Gene models

High confidence

AUGUSTUS models

T. pseudonana Joint Genome Institute models

Percent coding DNA

10.0

19.2

66.3

Gene density (genes/Mbp)

50

131

379

Total models

8133

21,121

11,776

Average model length (bp)

1986

1471

1746

Average number of exons per gene

2.95

2.18

2.54

Average exon length (bp)

599

608

613

Average number of introns per gene

1.95

1.18

1.5

Average intron length (bp)

115

125

125

Chloroplast genome size (bp)

129,320

128,813

Total chloroplast models

132

127

Mitochondrial genome size (bp)

58,021

43,827

Total mitochondrial models

35

35

  1. T. pseudonana data from [30, 34]