TY - JOUR AU - Vlaardingerbroek, I. AU - Beerens, B. AU - Rose, L. AU - Fokkens, L. AU - Cornelissen, B. J. C. AU - Rep, M. PY - 2016 DA - 2016// TI - Exchange of core chromosomes and horizontal transfer of lineage-specific chromosomes in Fusarium oxysporum: chromosome transfer and exchange in F. oxysporum JO - Environ Microbiol ID - Vlaardingerbroek2016 ER - TY - JOUR AU - Gordon, J. L. AU - Byrne, K. P. AU - Wolfe, K. H. PY - 2011 DA - 2011// TI - Mechanisms of chromosome number evolution in yeast JO - PLoS Genet. VL - 7 UR - https://doi.org/10.1371/journal.pgen.1002190 DO - 10.1371/journal.pgen.1002190 ID - Gordon2011 ER - TY - JOUR AU - Ketel, C. AU - Wang, H. S. W. AU - McClellan, M. AU - Bouchonville, K. AU - Selmecki, A. AU - Lahav, T. PY - 2009 DA - 2009// TI - Neocentromeres form efficiently at multiple possible loci in Candida albicans JO - PLoS Genet. VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000400 DO - 10.1371/journal.pgen.1000400 ID - Ketel2009 ER - TY - JOUR AU - Hane, J. K. AU - Rouxel, T. AU - Howlett, B. J. AU - Kema, G. H. AU - Goodwin, S. B. AU - Oliver, R. P. PY - 2011 DA - 2011// TI - A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi JO - Genome Biol VL - 12 UR - https://doi.org/10.1186/gb-2011-12-5-r45 DO - 10.1186/gb-2011-12-5-r45 ID - Hane2011 ER - TY - JOUR AU - Naumova, E. AU - Naumov, G. AU - Fournier, P. AU - Nguyen, H. V. AU - Gaillardin, C. PY - 1993 DA - 1993// TI - Chromosomal polymorphism of the yeast Yarrowia lipolytica and related species: electrophoretic karyotyping and hybridization with cloned genes JO - Curr Genet VL - 23 UR - https://doi.org/10.1007/BF00312633 DO - 10.1007/BF00312633 ID - Naumova1993 ER - TY - STD TI - Beopoulos A, Desfougeres T, Sabirova J, Zinjarde S, Neuvéglise C, Nicaud J-M. The hydrocarbon-degrading oleaginous yeast Yarrowia lipolytica. In: Timmis KN, editor. Handb. Hydrocarb. Lipid Microbiol. [Internet]. Berlin, Heidelberg: Springer Berlin Heidelberg; 2010. p. 2111–2121. http://link.springer.com/10.1007/978-3-540-77587-4_152. Accessed 10 Jun 2016. UR - http://link.springer.com/10.1007/978-3-540-77587-4_152 ID - ref6 ER - TY - JOUR AU - Madzak, C. AU - Tréton, B. AU - Blanchin-Roland, S. PY - 2000 DA - 2000// TI - Strong hybrid promoters and integrative expression/secretion vectors for quasi-constitutive expression of heterologous proteins in the yeast Yarrowia lipolytica JO - J Mol Microbiol Biotechnol VL - 2 ID - Madzak2000 ER - TY - JOUR AU - Wickerham, L. J. AU - Kurtzman, C. P. AU - Herman, A. I. PY - 1970 DA - 1970// TI - Sexual reproduction in Candida lipolytica JO - Science VL - 167 UR - https://doi.org/10.1126/science.167.3921.1141 DO - 10.1126/science.167.3921.1141 ID - Wickerham1970 ER - TY - JOUR AU - Pomraning, K. R. AU - Baker, S. E. PY - 2015 DA - 2015// TI - Draft genome sequence of the dimorphic yeast Yarrowia lipolytica strain W29 JO - Genome Announc. VL - 3 UR - https://doi.org/10.1128/genomeA.01211-15 DO - 10.1128/genomeA.01211-15 ID - Pomraning2015 ER - TY - JOUR AU - Liu, L. AU - Alper, H. S. PY - 2014 DA - 2014// TI - Draft genome sequence of the oleaginous yeast Yarrowia lipolytica PO1f, a commonly used metabolic engineering host JO - Genome Announc. VL - 2 UR - https://doi.org/10.1128/genomeA.00652-14 DO - 10.1128/genomeA.00652-14 ID - Liu2014 ER - TY - JOUR AU - Kretzschmar, A. AU - Otto, C. AU - Holz, M. AU - Werner, S. AU - Hübner, L. AU - Barth, G. PY - 2013 DA - 2013// TI - Increased homologous integration frequency in Yarrowia lipolytica strains defective in non-homologous end-joining JO - Curr Genet VL - 59 UR - https://doi.org/10.1007/s00294-013-0389-7 DO - 10.1007/s00294-013-0389-7 ID - Kretzschmar2013 ER - TY - JOUR AU - Verbeke, J. AU - Beopoulos, A. AU - Nicaud, J. -. M. PY - 2013 DA - 2013// TI - Efficient homologous recombination with short length flanking fragments in Ku70 deficient Yarrowia lipolytica strains JO - Biotechnol Lett VL - 35 UR - https://doi.org/10.1007/s10529-012-1107-0 DO - 10.1007/s10529-012-1107-0 ID - Verbeke2013 ER - TY - JOUR AU - Titorenko, V. I. AU - Chan, H. AU - Rachubinski, R. A. PY - 2000 DA - 2000// TI - Fusion of small peroxisomal vesicles in vitro reconstructs an early step in the in vivo multistep peroxisome assembly pathway of Yarrowia lipolytica JO - J Cell Biol VL - 148 UR - https://doi.org/10.1083/jcb.148.1.29 DO - 10.1083/jcb.148.1.29 ID - Titorenko2000 ER - TY - JOUR AU - Fickers, P. AU - Marty, A. AU - Nicaud, J. M. PY - 2011 DA - 2011// TI - The lipases from Yarrowia lipolytica: genetics, production, regulation, biochemical characterization and biotechnological applications JO - Biotechnol Adv VL - 29 UR - https://doi.org/10.1016/j.biotechadv.2011.04.005 DO - 10.1016/j.biotechadv.2011.04.005 ID - Fickers2011 ER - TY - JOUR AU - Kerkhoven, E. J. AU - Pomraning, K. R. AU - Baker, S. E. AU - Nielsen, J. PY - 2016 DA - 2016// TI - Regulation of amino-acid metabolism controls flux to lipid accumulation in Yarrowia lipolytica JO - Npj Syst Biol Appl. VL - 2 UR - https://doi.org/10.1038/npjsba.2016.5 DO - 10.1038/npjsba.2016.5 ID - Kerkhoven2016 ER - TY - STD TI - Kavšček M, Bhutada G, Madl T, Natter K. Optimization of lipid production with a genome-scale model of Yarrowia lipolytica. BMC Syst Biol [Internet]. 2015; 9. http://www.biomedcentral.com/1752-0509/9/72. Accessed 15 Jan 2016. UR - http://www.biomedcentral.com/1752-0509/9/72 ID - ref16 ER - TY - STD TI - Blazeck J, Hill A, Liu L, Knight R, Miller J, Pan A, et al. Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production. Nat Commun [Internet]. 2014; 5. http://www.nature.com/doifinder/10.1038/ncomms4131. Accessed 15 Jan 2016. UR - http://www.nature.com/doifinder/10.1038/ncomms4131 ID - ref17 ER - TY - JOUR AU - Matthaus, F. AU - Ketelhot, M. AU - Gatter, M. AU - Barth, G. PY - 2014 DA - 2014// TI - Production of lycopene in the non-carotenoid-producing yeast Yarrowia lipolytica JO - Appl Environ Microbiol VL - 80 UR - https://doi.org/10.1128/AEM.03167-13 DO - 10.1128/AEM.03167-13 ID - Matthaus2014 ER - TY - JOUR AU - Xue, Z. AU - Sharpe, P. L. AU - Hong, S. -. P. AU - Yadav, N. S. AU - Xie, D. AU - Short, D. R. PY - 2013 DA - 2013// TI - Production of omega-3 eicosapentaenoic acid by metabolic engineering of Yarrowia lipolytica JO - Nat Biotechnol VL - 31 UR - https://doi.org/10.1038/nbt.2622 DO - 10.1038/nbt.2622 ID - Xue2013 ER - TY - JOUR AU - Wolinski, H. AU - Kohlwein, S. D. PY - 2014 DA - 2014// TI - Single yeast cell imaging JO - Methods Mol Biol Clifton NJ VL - 1205 UR - https://doi.org/10.1007/978-1-4939-1363-3_7 DO - 10.1007/978-1-4939-1363-3_7 ID - Wolinski2014 ER - TY - STD TI - Dimmer KS. Fluorescence Staining of Mitochondria for morphology analysis in Saccharomyces cerevisiae. In: Xiao W, editor. Yeast Protoc [Internet]. New York: Springer New York; 2014. p. 131–52. http://link.springer.com/10.1007/978-1-4939-0799-1_9. Accessed 28 Mar 2016. UR - http://link.springer.com/10.1007/978-1-4939-0799-1_9 ID - ref21 ER - TY - JOUR AU - Wolinski, H. AU - Kohlwein, S. D. PY - 2015 DA - 2015// TI - Microscopic and spectroscopic techniques to investigate lipid droplet formation and turnover in yeast JO - Methods Mol Biol Clifton NJ. VL - 1270 UR - https://doi.org/10.1007/978-1-4939-2309-0_21 DO - 10.1007/978-1-4939-2309-0_21 ID - Wolinski2015 ER - TY - JOUR AU - Chaffin, W. L. AU - López-Ribot, J. L. AU - Casanova, M. AU - Gozalbo, D. AU - Martínez, J. P. PY - 1998 DA - 1998// TI - Cell wall and secreted proteins of Candida albicans: identification, function, and expression JO - Microbiol Mol Biol Rev VL - 62 ID - Chaffin1998 ER - TY - JOUR AU - Ram, A. F. J. AU - Klis, F. M. PY - 2006 DA - 2006// TI - Identification of fungal cell wall mutants using susceptibility assays based on Calcofluor white and Congo red JO - Nat Protoc VL - 1 UR - https://doi.org/10.1038/nprot.2006.397 DO - 10.1038/nprot.2006.397 ID - Ram2006 ER - TY - JOUR AU - Gulshan, K. AU - Moye-Rowley, W. S. PY - 2007 DA - 2007// TI - Multidrug resistance in fungi JO - Eukaryot Cell VL - 6 UR - https://doi.org/10.1128/EC.00254-07 DO - 10.1128/EC.00254-07 ID - Gulshan2007 ER - TY - JOUR AU - Fotopoulos, V. PY - 2012 DA - 2012// TI - Never say dye: new roles for an old fluorochrome JO - Plant Signal Behav. VL - 7 UR - https://doi.org/10.4161/psb.19236 DO - 10.4161/psb.19236 ID - Fotopoulos2012 ER - TY - JOUR AU - Aguedo, M. AU - Waché, Y. AU - Belin, J. -. M. PY - 2001 DA - 2001// TI - Intracellular pH-dependent efflux of the fluorescent probe pyranine in the yeast Yarrowia lipolytica JO - FEMS Microbiol Lett VL - 200 UR - https://doi.org/10.1111/j.1574-6968.2001.tb10713.x DO - 10.1111/j.1574-6968.2001.tb10713.x ID - Aguedo2001 ER - TY - JOUR AU - Pomraning, K. R. AU - Wei, S. AU - Karagiosis, S. A. AU - Kim, Y. -. M. AU - Dohnalkova, A. C. AU - Arey, B. W. PY - 2015 DA - 2015// TI - Comprehensive metabolomic, lipidomic and microscopic profiling of Yarrowia lipolytica during lipid accumulation identifies targets for increased lipogenesis JO - PLOS ONE. VL - 10 UR - https://doi.org/10.1371/journal.pone.0123188 DO - 10.1371/journal.pone.0123188 ID - Pomraning2015 ER - TY - JOUR AU - Chalfie, M. AU - Tu, Y. AU - Euskirchen, G. AU - Ward, W. AU - Prasher, D. PY - 1994 DA - 1994// TI - Green fluorescent protein as a marker for gene expression JO - Science VL - 263 UR - https://doi.org/10.1126/science.8303295 DO - 10.1126/science.8303295 ID - Chalfie1994 ER - TY - JOUR AU - Nicaud, J. -. M. AU - Madzak, C. AU - Broek, P. AU - Gysler, C. AU - Duboc, P. AU - Niederberger, P. PY - 2002 DA - 2002// TI - Protein expression and secretion in the yeast Yarrowia lipolytica JO - FEMS Yeast Res VL - 2 ID - Nicaud2002 ER - TY - STD TI - Barth G, Gaillardin C. Yarrowia lipolytica. Nonconv Yeasts Biotechnol [Internet]. Berlin, Heidelberg: Springer Berlin Heidelberg; 1996. p. 313–88. http://www.springerlink.com/index/10.1007/978-3-642-79856-6_10. Accessed 4 May 2016. UR - http://www.springerlink.com/index/10.1007/978-3-642-79856-6_10 ID - ref31 ER - TY - JOUR AU - Wang, Z. -. P. AU - Xu, H. -. M. AU - Wang, G. -. Y. AU - Chi, Z. AU - Chi, Z. -. M. PY - 2013 DA - 2013// TI - Disruption of the MIG1 gene enhances lipid biosynthesis in the oleaginous yeast Yarrowia lipolytica ACA-DC 50109 JO - Biochim Biophys Acta BBA-Mol Cell Biol Lipids. VL - 1831 UR - https://doi.org/10.1016/j.bbalip.2012.12.010 DO - 10.1016/j.bbalip.2012.12.010 ID - Wang2013 ER - TY - JOUR AU - Dulermo, R. AU - Gamboa-Meléndez, H. AU - Dulermo, T. AU - Thevenieau, F. AU - Nicaud, J. -. M. PY - 2014 DA - 2014// TI - The fatty acid transport protein Fat1p is involved in the export of fatty acids from lipid bodies in Yarrowia lipolytica JO - FEMS Yeast Res VL - 14 UR - https://doi.org/10.1111/1567-1364.12177 DO - 10.1111/1567-1364.12177 ID - Dulermo2014 ER - TY - JOUR AU - Tenagy AU - Park, J. S. AU - Iwama, R. AU - Kobayashi, S. AU - Ohta, A. AU - Horiuchi, H. PY - 2015 DA - 2015// TI - Involvement of acyl-CoA synthetase genes in n-alkane assimilation and fatty acid utilization in yeast Yarrowia lipolytica JO - FEMS Yeast Res. VL - 15 UR - https://doi.org/10.1093/femsyr/fov031 DO - 10.1093/femsyr/fov031 ID - Tenagy2015 ER - TY - JOUR AU - Blazeck, J. AU - Liu, L. AU - Redden, H. AU - Alper, H. PY - 2011 DA - 2011// TI - Tuning gene expression in Yarrowia lipolytica by a hybrid promoter approach JO - Appl Environ Microbiol VL - 77 UR - https://doi.org/10.1128/AEM.05763-11 DO - 10.1128/AEM.05763-11 ID - Blazeck2011 ER - TY - JOUR AU - Martinez-Vazquez, A. AU - Gonzalez-Hernandez, A. AU - Domínguez, Á. AU - Rachubinski, R. AU - Riquelme, M. AU - Cuellar-Mata, P. PY - 2013 DA - 2013// TI - Identification of the transcription factor Znc1p, which regulates the yeast-to-hypha transition in the dimorphic yeast Yarrowia lipolytica JO - PLoS ONE. VL - 8 UR - https://doi.org/10.1371/journal.pone.0066790 DO - 10.1371/journal.pone.0066790 ID - Martinez-Vazquez2013 ER - TY - JOUR AU - Pédelacq, J. -. D. AU - Cabantous, S. AU - Tran, T. AU - Terwilliger, T. C. AU - Waldo, G. S. PY - 2006 DA - 2006// TI - Engineering and characterization of a superfolder green fluorescent protein JO - Nat Biotechnol VL - 24 UR - https://doi.org/10.1038/nbt1172 DO - 10.1038/nbt1172 ID - Pédelacq2006 ER - TY - JOUR AU - Fickers, P. AU - Dall, M. AU - Gaillardin, C. AU - Thonart, P. AU - Nicaud, J. PY - 2003 DA - 2003// TI - New disruption cassettes for rapid gene disruption and marker rescue in the yeast Yarrowia lipolytica JO - J Microbiol Methods VL - 55 UR - https://doi.org/10.1016/j.mimet.2003.07.003 DO - 10.1016/j.mimet.2003.07.003 ID - Fickers2003 ER - TY - JOUR AU - Yang, J. AU - Nie, L. AU - Chen, B. AU - Liu, Y. AU - Kong, Y. AU - Wang, H. PY - 2014 DA - 2014// TI - Hygromycin-resistance vectors for gene expression in Pichia pastoris JO - Yeast Chichester Engl. VL - 31 UR - https://doi.org/10.1002/yea.3001 DO - 10.1002/yea.3001 ID - Yang2014 ER - TY - JOUR AU - Fennessy, D. AU - Grallert, A. AU - Krapp, A. AU - Cokoja, A. AU - Bridge, A. J. AU - Petersen, J. PY - 2014 DA - 2014// TI - Extending the Schizosaccharomyces pombe molecular genetic toolbox JO - PLoS ONE VL - 9 UR - https://doi.org/10.1371/journal.pone.0097683 DO - 10.1371/journal.pone.0097683 ID - Fennessy2014 ER - TY - JOUR AU - Carroll, A. n. n. e. M. AU - Sweigard, J. a. m. e. s. A. PY - 1994 DA - 1994// TI - Barbara valent. Improved vectors for selecting resistance to hygromycin JO - Fungal Genet Newsl. VL - 41 ID - Carroll1994 ER - TY - JOUR AU - Punt, P. J. AU - Oliver, R. P. AU - Dingemanse, M. A. AU - Pouwels, P. H. AU - Hondel, C. A. PY - 1987 DA - 1987// TI - Transformation of Aspergillus based on the hygromycin B resistance marker from Escherichia coli JO - Gene VL - 56 UR - https://doi.org/10.1016/0378-1119(87)90164-8 DO - 10.1016/0378-1119(87)90164-8 ID - Punt1987 ER - TY - JOUR AU - Dall, M. T. AU - Nicaud, J. M. AU - Gaillardin, C. PY - 1994 DA - 1994// TI - Multiple-copy integration in the yeast Yarrowia lipolytica JO - Curr Genet VL - 26 UR - https://doi.org/10.1007/BF00326302 DO - 10.1007/BF00326302 ID - Dall1994 ER - TY - JOUR AU - Dujon, B. AU - Sherman, D. AU - Fischer, G. AU - Durrens, P. AU - Casaregola, S. AU - Lafontaine, I. PY - 2004 DA - 2004// TI - Genome evolution in yeasts JO - Nature VL - 430 UR - https://doi.org/10.1038/nature02579 DO - 10.1038/nature02579 ID - Dujon2004 ER - TY - JOUR AU - Gibson, D. G. AU - Young, L. AU - Chuang, R. -. Y. AU - Venter, J. C. AU - Hutchison, C. A. AU - Smith, H. O. PY - 2009 DA - 2009// TI - Enzymatic assembly of DNA molecules up to several hundred kilobases JO - Nat Methods VL - 6 UR - https://doi.org/10.1038/nmeth.1318 DO - 10.1038/nmeth.1318 ID - Gibson2009 ER - TY - JOUR AU - Fournier, P. AU - Abbas, A. AU - Chasles, M. AU - Kudla, B. AU - Ogrydziak, D. M. AU - Yaver, D. PY - 1993 DA - 1993// TI - Colocalization of centromeric and replicative functions on autonomously replicating sequences isolated from the yeast Yarrowia lipolytica JO - Proc Natl Acad Sci USA VL - 90 UR - https://doi.org/10.1073/pnas.90.11.4912 DO - 10.1073/pnas.90.11.4912 ID - Fournier1993 ER - TY - JOUR AU - Pan, P. AU - Hua, Q. PY - 2012 DA - 2012// TI - Reconstruction and in silico analysis of metabolic network for an oleaginous yeast, Yarrowia lipolytica JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0051535 DO - 10.1371/journal.pone.0051535 ID - Pan2012 ER - TY - JOUR AU - Ratledge, C. AU - Wynn, J. P. PY - 2002 DA - 2002// TI - The biochemistry and molecular biology of lipid accumulation in oleaginous microorganisms JO - Adv Appl Microbiol VL - 51 UR - https://doi.org/10.1016/S0065-2164(02)51000-5 DO - 10.1016/S0065-2164(02)51000-5 ID - Ratledge2002 ER - TY - JOUR AU - Dulermo, T. AU - Lazar, Z. AU - Dulermo, R. AU - Rakicka, M. AU - Haddouche, R. AU - Nicaud, J. -. M. PY - 2015 DA - 2015// TI - Analysis of ATP-citrate lyase and malic enzyme mutants of Yarrowia lipolytica points out the importance of mannitol metabolism in fatty acid synthesis JO - Biochim Biophys Acta VL - 1851 UR - https://doi.org/10.1016/j.bbalip.2015.04.007 DO - 10.1016/j.bbalip.2015.04.007 ID - Dulermo2015 ER - TY - JOUR AU - Qiao, K. AU - Imam Abidi, S. H. AU - Liu, H. AU - Zhang, H. AU - Chakraborty, S. AU - Watson, N. PY - 2015 DA - 2015// TI - Engineering lipid overproduction in the oleaginous yeast Yarrowia lipolytica JO - Metab Eng VL - 29 UR - https://doi.org/10.1016/j.ymben.2015.02.005 DO - 10.1016/j.ymben.2015.02.005 ID - Qiao2015 ER - TY - JOUR AU - Tai, M. AU - Stephanopoulos, G. PY - 2013 DA - 2013// TI - Engineering the push and pull of lipid biosynthesis in oleaginous yeast Yarrowia lipolytica for biofuel production JO - Metab Eng VL - 15 UR - https://doi.org/10.1016/j.ymben.2012.08.007 DO - 10.1016/j.ymben.2012.08.007 ID - Tai2013 ER - TY - JOUR AU - Ivessa, A. S. AU - Schneiter, R. AU - Kohlwein, S. D. PY - 1997 DA - 1997// TI - Yeast acetyl-CoA carboxylase is associated with the cytoplasmic surface of the endoplasmic reticulum JO - Eur J Cell Biol VL - 74 ID - Ivessa1997 ER - TY - JOUR AU - Hoja, U. AU - Marthol, S. AU - Hofmann, J. AU - Stegner, S. AU - Schulz, R. AU - Meier, S. PY - 2004 DA - 2004// TI - HFA1 encoding an organelle-specific acetyl-CoA carboxylase controls mitochondrial fatty acid synthesis in Saccharomyces cerevisiae JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M401071200 DO - 10.1074/jbc.M401071200 ID - Hoja2004 ER - TY - JOUR AU - Kolodziej, S. J. AU - Penczek, P. A. AU - Schroeter, J. P. AU - Stoops, J. K. PY - 1996 DA - 1996// TI - Structure-function relationships of the Saccharomyces cerevisiae fatty acid synthase. Three-dimensional structure JO - J Biol Chem VL - 271 UR - https://doi.org/10.1074/jbc.271.45.28422 DO - 10.1074/jbc.271.45.28422 ID - Kolodziej1996 ER - TY - JOUR AU - Tehlivets, O. AU - Scheuringer, K. AU - Kohlwein, S. D. PY - 2007 DA - 2007// TI - Fatty acid synthesis and elongation in yeast JO - Biochim Biophys Acta VL - 1771 UR - https://doi.org/10.1016/j.bbalip.2006.07.004 DO - 10.1016/j.bbalip.2006.07.004 ID - Tehlivets2007 ER - TY - JOUR AU - Athenstaedt, K. AU - Jolivet, P. AU - Boulard, C. AU - Zivy, M. AU - Negroni, L. AU - Nicaud, J. -. M. PY - 2006 DA - 2006// TI - Lipid particle composition of the yeast Yarrowia lipolytica depends on the carbon source JO - Proteomics VL - 6 UR - https://doi.org/10.1002/pmic.200500339 DO - 10.1002/pmic.200500339 ID - Athenstaedt2006 ER - TY - JOUR AU - Athenstaedt, K. AU - Daum, G. PY - 1997 DA - 1997// TI - Biosynthesis of phosphatidic acid in lipid particles and endoplasmic reticulum of Saccharomyces cerevisiae JO - J Bacteriol VL - 179 UR - https://doi.org/10.1128/jb.179.24.7611-7616.1997 DO - 10.1128/jb.179.24.7611-7616.1997 ID - Athenstaedt1997 ER - TY - JOUR AU - Benghezal, M. AU - Roubaty, C. AU - Veepuri, V. AU - Knudsen, J. AU - Conzelmann, A. PY - 2007 DA - 2007// TI - SLC1 and SLC4 encode partially redundant acyl-coenzyme A 1-acylglycerol-3-phosphate O-acyltransferases of budding yeast JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M702719200 DO - 10.1074/jbc.M702719200 ID - Benghezal2007 ER - TY - JOUR AU - Jain, S. AU - Stanford, N. AU - Bhagwat, N. AU - Seiler, B. AU - Costanzo, M. AU - Boone, C. PY - 2007 DA - 2007// TI - Identification of a novel lysophospholipid acyltransferase in Saccharomyces cerevisiae JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M706326200 DO - 10.1074/jbc.M706326200 ID - Jain2007 ER - TY - JOUR AU - Ayciriex, S. AU - Guédard, M. AU - Camougrand, N. AU - Velours, G. AU - Schoene, M. AU - Leone, S. PY - 2012 DA - 2012// TI - YPR139c/LOA1 encodes a novel lysophosphatidic acid acyltransferase associated with lipid droplets and involved in TAG homeostasis JO - Mol Biol Cell VL - 23 UR - https://doi.org/10.1091/mbc.E11-07-0650 DO - 10.1091/mbc.E11-07-0650 ID - Ayciriex2012 ER - TY - JOUR AU - Henry, S. A. AU - Kohlwein, S. D. AU - Carman, G. M. PY - 2012 DA - 2012// TI - Metabolism and regulation of glycerolipids in the yeast Saccharomyces cerevisiae JO - Genetics VL - 190 UR - https://doi.org/10.1534/genetics.111.130286 DO - 10.1534/genetics.111.130286 ID - Henry2012 ER - TY - JOUR AU - Kohlwein, S. D. AU - Veenhuis, M. AU - Klei, I. J. PY - 2013 DA - 2013// TI - Lipid droplets and peroxisomes: key players in cellular lipid homeostasis or a matter of fat–store ‘em up or burn’em down JO - Genetics VL - 193 UR - https://doi.org/10.1534/genetics.112.143362 DO - 10.1534/genetics.112.143362 ID - Kohlwein2013 ER - TY - JOUR AU - Carman, G. M. AU - Han, G. -. S. PY - 2011 DA - 2011// TI - Regulation of phospholipid synthesis in the yeast Saccharomyces cerevisiae JO - Annu Rev Biochem VL - 80 UR - https://doi.org/10.1146/annurev-biochem-060409-092229 DO - 10.1146/annurev-biochem-060409-092229 ID - Carman2011 ER - TY - JOUR AU - Pascual, F. AU - Carman, G. M. PY - 2013 DA - 2013// TI - Phosphatidate phosphatase, a key regulator of lipid homeostasis JO - Biochim Biophys Acta VL - 1831 UR - https://doi.org/10.1016/j.bbalip.2012.08.006 DO - 10.1016/j.bbalip.2012.08.006 ID - Pascual2013 ER - TY - JOUR AU - Raetz, C. R. PY - 1978 DA - 1978// TI - Enzymology, genetics, and regulation of membrane phospholipid synthesis in Escherichia coli JO - Microbiol Rev VL - 42 ID - Raetz1978 ER - TY - JOUR AU - Carman, G. M. AU - Han, G. -. S. PY - 2009 DA - 2009// TI - Phosphatidic acid phosphatase, a key enzyme in the regulation of lipid synthesis JO - J Biol Chem VL - 284 UR - https://doi.org/10.1074/jbc.R800059200 DO - 10.1074/jbc.R800059200 ID - Carman2009 ER - TY - JOUR AU - Su, W. -. M. AU - Han, G. -. S. AU - Casciano, J. AU - Carman, G. M. PY - 2012 DA - 2012// TI - Protein kinase A-mediated phosphorylation of Pah1p phosphatidate phosphatase functions in conjunction with the Pho85p-Pho80p and Cdc28p-cyclin B kinases to regulate lipid synthesis in yeast JO - J Biol Chem VL - 287 UR - https://doi.org/10.1074/jbc.M112.402339 DO - 10.1074/jbc.M112.402339 ID - Su2012 ER - TY - JOUR AU - Su, W. -. M. AU - Han, G. -. S. AU - Carman, G. M. PY - 2014 DA - 2014// TI - Cross-talk phosphorylations by protein kinase C and Pho85p-Pho80p protein kinase regulate Pah1p phosphatidate phosphatase abundance in Saccharomyces cerevisiae JO - J Biol Chem VL - 289 UR - https://doi.org/10.1074/jbc.M114.581462 DO - 10.1074/jbc.M114.581462 ID - Su2014 ER - TY - JOUR AU - Choi, H. -. S. AU - Su, W. -. M. AU - Han, G. -. S. AU - Plote, D. AU - Xu, Z. AU - Carman, G. M. PY - 2012 DA - 2012// TI - Pho85p-Pho80p phosphorylation of yeast Pah1p phosphatidate phosphatase regulates its activity, location, abundance, and function in lipid metabolism JO - J Biol Chem VL - 287 UR - https://doi.org/10.1074/jbc.M112.346023 DO - 10.1074/jbc.M112.346023 ID - Choi2012 ER - TY - JOUR AU - Athenstaedt, K. PY - 2011 DA - 2011// TI - YALI0E32769 g (DGA1) and YALI0E16797 g (LRO1) encode major triacylglycerol synthases of the oleaginous yeast Yarrowia lipolytica JO - Biochim Biophys Acta VL - 1811 UR - https://doi.org/10.1016/j.bbalip.2011.07.004 DO - 10.1016/j.bbalip.2011.07.004 ID - Athenstaedt2011 ER - TY - JOUR AU - Beopoulos, A. AU - Haddouche, R. AU - Kabran, P. AU - Dulermo, T. AU - Chardot, T. AU - Nicaud, J. -. M. PY - 2012 DA - 2012// TI - Identification and characterization of DGA2, an acyltransferase of the DGAT1 acyl-CoA:diacylglycerol acyltransferase family in the oleaginous yeast Yarrowia lipolytica. New insights into the storage lipid metabolism of oleaginous yeasts JO - Appl Microbiol Biotechnol VL - 93 UR - https://doi.org/10.1007/s00253-011-3506-x DO - 10.1007/s00253-011-3506-x ID - Beopoulos2012 ER - TY - JOUR AU - Oelkers, P. AU - Tinkelenberg, A. AU - Erdeniz, N. AU - Cromley, D. AU - Billheimer, J. T. AU - Sturley, S. L. PY - 2000 DA - 2000// TI - A lecithin cholesterol acyltransferase-like gene mediates diacylglycerol esterification in yeast JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.C000144200 DO - 10.1074/jbc.C000144200 ID - Oelkers2000 ER - TY - JOUR AU - Zweytick, D. AU - Leitner, E. AU - Kohlwein, S. D. AU - Yu, C. AU - Rothblatt, J. AU - Daum, G. PY - 2000 DA - 2000// TI - Contribution of Are1p and Are2p to steryl ester synthesis in the yeast Saccharomyces cerevisiae JO - Eur J Biochem FEBS. VL - 267 UR - https://doi.org/10.1046/j.1432-1327.2000.01103.x DO - 10.1046/j.1432-1327.2000.01103.x ID - Zweytick2000 ER - TY - JOUR AU - Dulermo, T. AU - Tréton, B. AU - Beopoulos, A. AU - Kabran Gnankon, A. P. AU - Haddouche, R. AU - Nicaud, J. -. M. PY - 2013 DA - 2013// TI - Characterization of the two intracellular lipases of Y. lipolytica encoded by TGL3 and TGL4 genes: new insights into the role of intracellular lipases and lipid body organisation JO - Biochim Biophys Acta VL - 1831 UR - https://doi.org/10.1016/j.bbalip.2013.07.001 DO - 10.1016/j.bbalip.2013.07.001 ID - Dulermo2013 ER - TY - JOUR AU - Ham, H. J. AU - Rho, H. J. AU - Shin, S. K. AU - Yoon, H. -. J. PY - 2010 DA - 2010// TI - The TGL2 gene of Saccharomyces cerevisiae encodes an active acylglycerol lipase located in the mitochondria JO - J Biol Chem VL - 285 UR - https://doi.org/10.1074/jbc.M109.046946 DO - 10.1074/jbc.M109.046946 ID - Ham2010 ER - TY - JOUR AU - Ansari, A. M. AU - Ahmed, A. K. AU - Matsangos, A. E. AU - Lay, F. AU - Born, L. J. AU - Marti, G. PY - 2016 DA - 2016// TI - Cellular GFP toxicity and immunogenicity: potential confounders in in vivo cell tracking experiments JO - Stem Cell Rev Rep. VL - 12 UR - https://doi.org/10.1007/s12015-016-9670-8 DO - 10.1007/s12015-016-9670-8 ID - Ansari2016 ER - TY - JOUR AU - Breker, M. AU - Gymrek, M. AU - Moldavski, O. AU - Schuldiner, M. PY - 2014 DA - 2014// TI - LoQAtE–localization and quantitation ATlas of the yeast proteomE. A new tool for multiparametric dissection of single-protein behavior in response to biological perturbations in yeast JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt933 DO - 10.1093/nar/gkt933 ID - Breker2014 ER - TY - JOUR AU - Huh, W. -. K. AU - Falvo, J. V. AU - Gerke, L. C. AU - Carroll, A. S. AU - Howson, R. W. AU - Weissman, J. S. PY - 2003 DA - 2003// TI - Global analysis of protein localization in budding yeast JO - Nature VL - 425 UR - https://doi.org/10.1038/nature02026 DO - 10.1038/nature02026 ID - Huh2003 ER - TY - JOUR AU - Jonikas, M. C. AU - Collins, S. R. AU - Denic, V. AU - Oh, E. AU - Quan, E. M. AU - Schmid, V. PY - 2009 DA - 2009// TI - Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum JO - Science VL - 323 UR - https://doi.org/10.1126/science.1167983 DO - 10.1126/science.1167983 ID - Jonikas2009 ER - TY - JOUR AU - Dean, N. AU - Zhang, Y. B. AU - Poster, J. B. PY - 1997 DA - 1997// TI - The VRG4 gene is required for GDP-mannose transport into the lumen of the Golgi in the yeast, Saccharomyces cerevisiae JO - J Biol Chem VL - 272 UR - https://doi.org/10.1074/jbc.272.50.31908 DO - 10.1074/jbc.272.50.31908 ID - Dean1997 ER - TY - JOUR AU - Hung, N. -. J. AU - Johnson, A. W. PY - 2006 DA - 2006// TI - Nuclear recycling of the Pre-60S ribosomal subunit-associated factor Arx1 depends on Rei1 in Saccharomyces cerevisiae JO - Mol Cell Biol VL - 26 UR - https://doi.org/10.1128/MCB.26.10.3718-3727.2006 DO - 10.1128/MCB.26.10.3718-3727.2006 ID - Hung2006 ER - TY - JOUR AU - Hung, N. -. J. AU - Lo, K. -. Y. AU - Patel, S. S. AU - Helmke, K. AU - Johnson, A. W. PY - 2008 DA - 2008// TI - Arx1 is a nuclear export receptor for the 60S ribosomal subunit in yeast JO - Mol Biol Cell VL - 19 UR - https://doi.org/10.1091/mbc.E07-09-0968 DO - 10.1091/mbc.E07-09-0968 ID - Hung2008 ER - TY - JOUR AU - Foster, M. W. AU - Forrester, M. T. AU - Stamler, J. S. PY - 2009 DA - 2009// TI - A protein microarray-based analysis of S-nitrosylation JO - Proc Natl Acad Sci USA VL - 106 UR - https://doi.org/10.1073/pnas.0900729106 DO - 10.1073/pnas.0900729106 ID - Foster2009 ER - TY - JOUR AU - Orozco, H. AU - Matallana, E. AU - Aranda, A. PY - 2012 DA - 2012// TI - Oxidative stress tolerance, adenylate cyclase, and autophagy are key players in the chronological life span of Saccharomyces cerevisiae during Winemaking JO - Appl Environ Microbiol VL - 78 UR - https://doi.org/10.1128/AEM.07261-11 DO - 10.1128/AEM.07261-11 ID - Orozco2012 ER - TY - JOUR AU - Reinders, J. AU - Zahedi, R. P. AU - Pfanner, N. AU - Meisinger, C. AU - Sickmann, A. PY - 2006 DA - 2006// TI - Toward the complete yeast mitochondrial proteome: multidimensional separation techniques for mitochondrial proteomics JO - J Proteome Res VL - 5 UR - https://doi.org/10.1021/pr050477f DO - 10.1021/pr050477f ID - Reinders2006 ER - TY - JOUR AU - Hess, D. C. AU - Myers, C. L. AU - Huttenhower, C. AU - Hibbs, M. A. AU - Hayes, A. P. AU - Paw, J. PY - 2009 DA - 2009// TI - Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis JO - PLoS Genet. VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000407 DO - 10.1371/journal.pgen.1000407 ID - Hess2009 ER - TY - JOUR AU - Delmer, D. P. PY - 1979 DA - 1979// TI - Dimethylsulfoxide as a potential tool for analysis of compartmentation in living plant cells JO - Plant Physiol VL - 64 UR - https://doi.org/10.1104/pp.64.4.623 DO - 10.1104/pp.64.4.623 ID - Delmer1979 ER - TY - JOUR AU - Evans, C. h. r. i. s. t. o. p. h. e. r. T. AU - Ratledge, C. o. l. i. n. PY - 1984 DA - 1984// TI - Effect of nitrogen source on lipid accumulation in Oleaginous yeasts JO - J Gen Microbiol VL - 130 ID - Evans1984 ER - TY - JOUR AU - Park, W. S. AU - Murphy, P. A. AU - Glatz, B. A. PY - 1990 DA - 1990// TI - Lipid metabolism and cell composition of the oleaginous yeast Apiotrichum curvatum grown at different carbon to nitrogen ratios JO - Can J Microbiol VL - 36 UR - https://doi.org/10.1139/m90-056 DO - 10.1139/m90-056 ID - Park1990 ER - TY - JOUR AU - Cescut, J. AU - Fillaudeau, L. AU - Molina-Jouve, C. AU - Uribelarrea, J. -. L. PY - 2014 DA - 2014// TI - Carbon accumulation in Rhodotorula glutinis induced by nitrogen limitation JO - Biotechnol Biofuels VL - 7 UR - https://doi.org/10.1186/s13068-014-0164-0 DO - 10.1186/s13068-014-0164-0 ID - Cescut2014 ER - TY - JOUR AU - Calvey, C. H. AU - Su, Y. -. K. AU - Willis, L. B. AU - McGee, M. AU - Jeffries, T. W. PY - 2016 DA - 2016// TI - Nitrogen limitation, oxygen limitation, and lipid accumulation in Lipomyces starkeyi JO - Bioresour Technol VL - 200 UR - https://doi.org/10.1016/j.biortech.2015.10.104 DO - 10.1016/j.biortech.2015.10.104 ID - Calvey2016 ER - TY - JOUR AU - Liu, T. AU - Li, Y. AU - Liu, F. AU - Wang, C. PY - 2016 DA - 2016// TI - The enhanced lipid accumulation in oleaginous microalga by the potential continuous nitrogen-limitation (CNL) strategy JO - Bioresour Technol VL - 203 UR - https://doi.org/10.1016/j.biortech.2015.12.021 DO - 10.1016/j.biortech.2015.12.021 ID - Liu2016 ER - TY - JOUR AU - Ushinsky, S. C. AU - Bussey, H. AU - Ahmed, A. A. AU - Wang, Y. AU - Friesen, J. AU - Williams, B. A. PY - 1997 DA - 1997// TI - Histone H1 in Saccharomyces cerevisiae JO - Yeast Chichester Engl. VL - 13 UR - https://doi.org/3.0.CO;2-5 DO - 3.0.CO;2-5 ID - Ushinsky1997 ER - TY - JOUR AU - Sorger, D. AU - Athenstaedt, K. AU - Hrastnik, C. AU - Daum, G. PY - 2004 DA - 2004// TI - A yeast strain lacking lipid particles bears a defect in ergosterol formation JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M403251200 DO - 10.1074/jbc.M403251200 ID - Sorger2004 ER - TY - JOUR AU - Chung, S. -. K. AU - Lee, K. -. W. AU - Kang, H. I. AU - Yamashita, C. AU - Kudo, M. AU - Yoshida, Y. PY - 2000 DA - 2000// TI - Design and synthesis of potential inhibitors of the ergosterol biosynthesis as antifungal agents JO - Bioorg Med Chem. VL - 8 UR - https://doi.org/10.1016/S0968-0896(00)00177-2 DO - 10.1016/S0968-0896(00)00177-2 ID - Chung2000 ER - TY - JOUR AU - Hazel, H. B. AU - Kielland-Brandt, M. C. AU - Winther, J. R. PY - 1996 DA - 1996// TI - Review: biosynthesis and function of yeast vacuolar proteases JO - Yeast Chichester Engl. VL - 12 UR - https://doi.org/3.0.CO;2-N DO - 3.0.CO;2-N ID - Hazel1996 ER - TY - JOUR AU - Spencer, J. AU - Phister, T. G. AU - Smart, K. A. AU - Greetham, D. PY - 2014 DA - 2014// TI - Tolerance of pentose utilising yeast to hydrogen peroxide-induced oxidative stress JO - BMC Res. Notes. VL - 7 UR - https://doi.org/10.1186/1756-0500-7-151 DO - 10.1186/1756-0500-7-151 ID - Spencer2014 ER - TY - JOUR AU - Lopes, M. AU - Mota, M. AU - Belo, I. PY - 2013 DA - 2013// TI - Comparison of Yarrowia lipolytica and Pichia pastoris cellular response to different agents of oxidative stress JO - Appl Biochem Biotechnol VL - 170 UR - https://doi.org/10.1007/s12010-013-0205-3 DO - 10.1007/s12010-013-0205-3 ID - Lopes2013 ER - TY - JOUR AU - Biryukova, E. N. AU - Medentsev, A. G. AU - Arinbasarova, A. Y. AU - Akimenko, V. K. PY - 2006 DA - 2006// TI - Tolerance of the yeast Yarrowia lipolytica to oxidative stress JO - Microbiology VL - 75 UR - https://doi.org/10.1134/S0026261706030015 DO - 10.1134/S0026261706030015 ID - Biryukova2006 ER - TY - JOUR AU - Kawasse, F. M. AU - Amaral, P. F. AU - Rocha-Leão, M. H. M. AU - Amaral, A. L. AU - Ferreira, E. C. AU - Coelho, M. A. Z. PY - 2003 DA - 2003// TI - Morphological analysis of Yarrowia lipolytica under stress conditions through image processing JO - Bioprocess Biosyst Eng VL - 25 UR - https://doi.org/10.1007/s00449-003-0319-z DO - 10.1007/s00449-003-0319-z ID - Kawasse2003 ER - TY - JOUR AU - Eitzen, G. A. AU - Szilard, R. K. AU - Rachubinski, R. A. PY - 1997 DA - 1997// TI - Enlarged peroxisomes are present in oleic acid-grown Yarrowia lipolytica overexpressing the PEX16 gene encoding an intraperoxisomal peripheral membrane peroxin JO - J Cell Biol VL - 137 UR - https://doi.org/10.1083/jcb.137.6.1265 DO - 10.1083/jcb.137.6.1265 ID - Eitzen1997 ER - TY - JOUR AU - Szilard, R. K. AU - Titorenko, V. I. AU - Veenhuis, M. AU - Rachubinski, R. A. PY - 1995 DA - 1995// TI - Pay32p of the yeast Yarrowia lipolytica is an intraperoxisomal component of the matrix protein translocation machinery JO - J Cell Biol VL - 131 UR - https://doi.org/10.1083/jcb.131.6.1453 DO - 10.1083/jcb.131.6.1453 ID - Szilard1995 ER - TY - JOUR AU - Titorenko, V. I. AU - Smith, J. J. AU - Szilard, R. K. AU - Rachubinski, R. A. PY - 1998 DA - 1998// TI - Pex20p of the Yeast Yarrowia lipolytica is required for the oligomerization of thiolase in the cytosol and for its targeting to the peroxisome JO - J Cell Biol VL - 142 UR - https://doi.org/10.1083/jcb.142.2.403 DO - 10.1083/jcb.142.2.403 ID - Titorenko1998 ER - TY - JOUR AU - Wriessnegger, T. AU - Gübitz, G. AU - Leitner, E. AU - Ingolic, E. AU - Cregg, J. AU - Cruz, B. J. PY - 2007 DA - 2007// TI - Lipid composition of peroxisomes from the yeast Pichia pastoris grown on different carbon sources JO - Biochim Biophys Acta VL - 1771 UR - https://doi.org/10.1016/j.bbalip.2007.01.004 DO - 10.1016/j.bbalip.2007.01.004 ID - Wriessnegger2007 ER - TY - JOUR AU - Nazarko, T. AU - Nicaud, J. AU - Sibirny, A. PY - 2005 DA - 2005// TI - Observation of the peroxisome-vacuole dynamics by fluorescence microscopy with a single filter set JO - Cell Biol Int VL - 29 UR - https://doi.org/10.1016/j.cellbi.2004.11.014 DO - 10.1016/j.cellbi.2004.11.014 ID - Nazarko2005 ER - TY - JOUR AU - Chang, J. AU - Mast, F. D. AU - Fagarasanu, A. AU - Rachubinski, D. A. AU - Eitzen, G. A. AU - Dacks, J. B. PY - 2009 DA - 2009// TI - Pex3 peroxisome biogenesis proteins function in peroxisome inheritance as class V myosin receptors JO - J Cell Biol VL - 187 UR - https://doi.org/10.1083/jcb.200902117 DO - 10.1083/jcb.200902117 ID - Chang2009 ER - TY - JOUR AU - Kabran, P. AU - Rossignol, T. AU - Gaillardin, C. AU - Nicaud, J. -. M. AU - Neuveglise, C. PY - 2012 DA - 2012// TI - Alternative splicing regulates targeting of malate dehydrogenase in Yarrowia lipolytica JO - DNA Res VL - 19 UR - https://doi.org/10.1093/dnares/dss007 DO - 10.1093/dnares/dss007 ID - Kabran2012 ER - TY - JOUR AU - Dulermo, T. AU - Nicaud, J. -. M. PY - 2011 DA - 2011// TI - Involvement of the G3P shuttle and β-oxidation pathway in the control of TAG synthesis and lipid accumulation in Yarrowia lipolytica JO - Metab Eng VL - 13 UR - https://doi.org/10.1016/j.ymben.2011.05.002 DO - 10.1016/j.ymben.2011.05.002 ID - Dulermo2011 ER - TY - JOUR AU - Gould, S. J. AU - Kalish, J. E. AU - Morrell, J. C. AU - Bjorkman, J. AU - Urquhart, A. J. AU - Crane, D. I. PY - 1996 DA - 1996// TI - Pex13p is an SH3 protein of the peroxisome membrane and a docking factor for the predominantly cytoplasmic PTs1 receptor JO - J Cell Biol VL - 135 UR - https://doi.org/10.1083/jcb.135.1.85 DO - 10.1083/jcb.135.1.85 ID - Gould1996 ER - TY - JOUR AU - Elgersma, Y. AU - Kwast, L. AU - Klein, A. AU - Voorn-Brouwer, T. AU - Berg, M. AU - Metzig, B. PY - 1996 DA - 1996// TI - The SH3 domain of the Saccharomyces cerevisiae peroxisomal membrane protein Pex13p functions as a docking site for Pex5p, a mobile receptor for the import PTS1-containing proteins JO - J Cell Biol VL - 135 UR - https://doi.org/10.1083/jcb.135.1.97 DO - 10.1083/jcb.135.1.97 ID - Elgersma1996 ER - TY - JOUR AU - Smith, J. J. AU - Aitchison, J. D. PY - 2013 DA - 2013// TI - Peroxisomes take shape JO - Nat Rev Mol Cell Biol VL - 14 UR - https://doi.org/10.1038/nrm3700 DO - 10.1038/nrm3700 ID - Smith2013 ER - TY - JOUR AU - Manjithaya, R. AU - Nazarko, T. Y. AU - Farré, J. -. C. AU - Subramani, S. PY - 2010 DA - 2010// TI - Molecular mechanism and physiological role of pexophagy JO - FEBS Lett VL - 584 UR - https://doi.org/10.1016/j.febslet.2010.01.019 DO - 10.1016/j.febslet.2010.01.019 ID - Manjithaya2010 ER - TY - JOUR AU - Hutchins, M. U. AU - Veenhuis, M. AU - Klionsky, D. J. PY - 1999 DA - 1999// TI - Peroxisome degradation in Saccharomyces cerevisiae is dependent on machinery of macroautophagy and the Cvt pathway JO - J Cell Sci VL - 112 ID - Hutchins1999 ER - TY - JOUR AU - Cordero Otero, R. AU - Gaillardin, C. PY - 1996 DA - 1996// TI - Efficient selection of hygromycin-B-resistant Yarrowia lipolytica transformants JO - Appl Microbiol Biotechnol VL - 46 UR - https://doi.org/10.1007/s002530050796 DO - 10.1007/s002530050796 ID - Cordero Otero1996 ER - TY - JOUR AU - Ruiz-Pavón, L. AU - Domínguez, A. PY - 2007 DA - 2007// TI - Characterization of the Yarrowia lipolytica YlSRP72 gene, a component of the yeast signal recognition particle JO - Int Microbiol Off J Span Soc Microbiol. VL - 10 ID - Ruiz-Pavón2007 ER - TY - JOUR AU - Handee, W. AU - Li, X. AU - Hall, K. W. AU - Deng, X. AU - Li, P. AU - Benning, C. PY - 2016 DA - 2016// TI - An energy-independent pro-longevity function of triacylglycerol in yeast JO - PLOS Genet. VL - 12 UR - https://doi.org/10.1371/journal.pgen.1005878 DO - 10.1371/journal.pgen.1005878 ID - Handee2016 ER - TY - STD TI - Pomraning KR, Kim Y-M, Nicora CD, Chu RK, Bredeweg EL, Purvine SO, et al. Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica. BMC Genomics [Internet]. 2016; 17. http://www.biomedcentral.com/1471-2164/17/138. Accessed 30 Mar 2016. UR - http://www.biomedcentral.com/1471-2164/17/138 ID - ref117 ER - TY - JOUR AU - Mekouar, M. AU - Blanc-Lenfle, I. AU - Ozanne, C. AU - Silva, C. AU - Cruaud, C. AU - Wincker, P. PY - 2010 DA - 2010// TI - Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts JO - Genome Biol VL - 11 UR - https://doi.org/10.1186/gb-2010-11-6-r65 DO - 10.1186/gb-2010-11-6-r65 ID - Mekouar2010 ER - TY - JOUR AU - Morin, N. AU - Cescut, J. AU - Beopoulos, A. AU - Lelandais, G. AU - Berre, V. AU - Uribelarrea, J. -. L. PY - 2011 DA - 2011// TI - Transcriptomic analyses during the transition from biomass production to lipid accumulation in the oleaginous yeast Yarrowia lipolytica JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0027966 DO - 10.1371/journal.pone.0027966 ID - Morin2011 ER - TY - JOUR AU - Colot, H. V. AU - Park, G. AU - Turner, G. E. AU - Ringelberg, C. AU - Crew, C. M. AU - Litvinkova, L. PY - 2006 DA - 2006// TI - A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors JO - Proc Natl Acad Sci VL - 103 UR - https://doi.org/10.1073/pnas.0601456103 DO - 10.1073/pnas.0601456103 ID - Colot2006 ER - TY - JOUR AU - Jefferson, R. A. AU - Kavanagh, T. A. AU - Bevan, M. W. PY - 1987 DA - 1987// TI - GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants JO - EMBO J VL - 6 ID - Jefferson1987 ER - TY - JOUR AU - Holsters, M. AU - Waele, D. AU - Depicker, A. AU - Messens, E. AU - Montagu, M. AU - Schell, J. PY - 1978 DA - 1978// TI - Transfection and transformation of Agrobacterium tumefaciens JO - Mol Gen Genet MGG. VL - 163 UR - https://doi.org/10.1007/BF00267408 DO - 10.1007/BF00267408 ID - Holsters1978 ER - TY - JOUR AU - Groot, M. J. A. AU - Bundock, P. AU - Hooykaas, P. J. AU - Beijersbergen, A. G. M. PY - 1998 DA - 1998// TI - Agrobacterium tumefaciens-mediated transformation of filamentous fungi JO - Nat Biotechnol VL - 16 UR - https://doi.org/10.1038/nbt0998-839 DO - 10.1038/nbt0998-839 ID - Groot1998 ER - TY - JOUR AU - Murray, M. G. AU - Thompson, W. F. PY - 1980 DA - 1980// TI - Rapid isolation of high molecular weight plant DNA JO - Nucleic Acids Res VL - 8 UR - https://doi.org/10.1093/nar/8.19.4321 DO - 10.1093/nar/8.19.4321 ID - Murray1980 ER - TY - STD TI - Zerbino DR. Using the Velvet de novo assembler for short-read sequencing technologies. Curr Protoc Bioinforma. Ed. Board Andreas Baxevanis Al. 2010; Chapter 11: Unit 11.5. ID - ref125 ER - TY - JOUR AU - Trapnell, C. AU - Pachter, L. AU - Salzberg, S. L. PY - 2009 DA - 2009// TI - TopHat: discovering splice junctions with RNA-Seq JO - Bioinforma Oxf Engl. VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp120 DO - 10.1093/bioinformatics/btp120 ID - Trapnell2009 ER - TY - JOUR AU - Götz, S. AU - García-Gómez, J. M. AU - Terol, J. AU - Williams, T. D. AU - Nagaraj, S. H. AU - Nueda, M. J. PY - 2008 DA - 2008// TI - High-throughput functional annotation and data mining with the Blast2GO suite JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn176 DO - 10.1093/nar/gkn176 ID - Götz2008 ER - TY - JOUR AU - Kent, W. J. PY - 2002 DA - 2002// TI - BLAT–the BLAST-like alignment tool JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.229202 DO - 10.1101/gr.229202 ID - Kent2002 ER - TY - JOUR AU - Langmead, B. AU - Trapnell, C. AU - Pop, M. AU - Salzberg, S. L. PY - 2009 DA - 2009// TI - Ultrafast and memory-efficient alignment of short DNA sequences to the human genome JO - Genome Biol VL - 10 UR - https://doi.org/10.1186/gb-2009-10-3-r25 DO - 10.1186/gb-2009-10-3-r25 ID - Langmead2009 ER - TY - JOUR AU - Gritz, L. AU - Davies, J. PY - 1983 DA - 1983// TI - Plasmid-encoded hygromycin B resistance: the sequence of hygromycin B phosphotransferase gene and its expression in Escherichia coli and Saccharomyces cerevisiae JO - Gene VL - 25 UR - https://doi.org/10.1016/0378-1119(83)90223-8 DO - 10.1016/0378-1119(83)90223-8 ID - Gritz1983 ER - TY - JOUR AU - Gietz, R. D. AU - Woods, R. A. PY - 2002 DA - 2002// TI - Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method JO - Methods Enzymol VL - 350 UR - https://doi.org/10.1016/S0076-6879(02)50957-5 DO - 10.1016/S0076-6879(02)50957-5 ID - Gietz2002 ER - TY - JOUR AU - Ghaemmaghami, S. AU - Huh, W. -. K. AU - Bower, K. AU - Howson, R. W. AU - Belle, A. AU - Dephoure, N. PY - 2003 DA - 2003// TI - Global analysis of protein expression in yeast JO - Nature VL - 425 UR - https://doi.org/10.1038/nature02046 DO - 10.1038/nature02046 ID - Ghaemmaghami2003 ER - TY - JOUR AU - Gietz, R. D. PY - 2014 DA - 2014// TI - Yeast transformation by the LiAc/SS carrier DNA/PEG method JO - Methods Mol Biol Clifton NJ. VL - 1163 UR - https://doi.org/10.1007/978-1-4939-0799-1_4 DO - 10.1007/978-1-4939-0799-1_4 ID - Gietz2014 ER - TY - JOUR AU - Schneider, C. A. AU - Rasband, W. S. AU - Eliceiri, K. W. PY - 2012 DA - 2012// TI - NIH Image to ImageJ: 25 years of image analysis JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.2089 DO - 10.1038/nmeth.2089 ID - Schneider2012 ER - TY - JOUR AU - Carpenter, A. E. AU - Jones, T. R. AU - Lamprecht, M. R. AU - Clarke, C. AU - Kang, I. H. AU - Friman, O. PY - 2006 DA - 2006// TI - Cell profiler: image analysis software for identifying and quantifying cell phenotypes JO - Genome Biol VL - 7 UR - https://doi.org/10.1186/gb-2006-7-10-r100 DO - 10.1186/gb-2006-7-10-r100 ID - Carpenter2006 ER - TY - JOUR AU - Schindelin, J. AU - Arganda-Carreras, I. AU - Frise, E. AU - Kaynig, V. AU - Longair, M. AU - Pietzsch, T. PY - 2012 DA - 2012// TI - Fiji: an open-source platform for biological-image analysis JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.2019 DO - 10.1038/nmeth.2019 ID - Schindelin2012 ER - TY - JOUR AU - Gaillardin, C. M. AU - Charoy, V. AU - Heslot, H. PY - 1973 DA - 1973// TI - A study of copulation, sporulation and meiotic segregation in Candida lipolytica JO - Arch. Mikrobiol. VL - 92 UR - https://doi.org/10.1007/BF00409513 DO - 10.1007/BF00409513 ID - Gaillardin1973 ER -