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Table 2 New transcripts by RNA-seq in FKP355 compared to CLIB122

From: A molecular genetic toolbox for Yarrowia lipolytica

Protein FKP355 contig Start Stop Annotation Transcript ID to CLIB122 (%) Multigene families
FKP355.266.1|m.2906 NODE_1012 5782 7332 – 65.4  
FKP355.702.1|m.5424 NODE_1296 70375 70970 – 85.7  
FKP355.831.1|m.6293 NODE_139 1 1282 – 0.0 3
FKP355.1249.1|m.9149 NODE_187 5 419 – 0.0  
FKP355.1708.1|m.12810 NODE_215 3 799 – 10.3 4
FKP355.1712.1|m.12805 NODE_215 968 1934 Metal dependant phosphohydrolase 0.0 2
FKP355.1717.1|m.12793 NODE_215 1995 2977 Ribosomal protein L15 0.0  
FKP355.1713.1|m.12814 NODE_215 3373 5348 Exonuclease domain containing protein 0.0 4
FKP355.1716.1|m.12796 NODE_215 6426 8721 LDB19 protein 0.0  
FKP355.2293.1|m.17448 NODE_239 75445 81675 Retrotransposon ty3-gypsy subclass 8.8  
FKP355.2453.1|m.18283 NODE_243 3 6139 Orotidine 5-phosphate decarboxylase (ura3) 15.9  
FKP355.2489.1|m.18598 NODE_263 3977 4883 Kelch repeat protein 0.0 10
FKP355.4404.1|m.32419 NODE_388 4 178 – 0.0  
FKP355.5225.1|m.38433 NODE_526 112122 112302 – 84.0  
FKP355.5430.1|m.40180 NODE_58 3 1702 Homogentisate dioxygenase 5.4  
FKP355.5431.1|m.39976 NODE_58 2102 5597 Fumarylacetoacetase 0.0  
FKP355.5453.1|m.40112 NODE_58 7439 8998 Glycosyltransferase 0.0  
FKP355.5436.1|m.40252 NODE_58 9224 10476 Clathrin coat assembly protein 0.0  
FKP355.5440.1|m.40006 NODE_58 10559 14552 Conserved hypothetical protein 0.0  
FKP355.5440.1|m.40007 NODE_58 10559 14552 Conserved hypothetical protein 0.0  
FKP355.5469.1|m.39839 NODE_58 15038 16629 Argininosuccinate synthase 0.0  
FKP355.5446.1|m.39944 NODE_58 16715 18168 Serine threonine protein phosphatase 0.0  
FKP355.5441.1|m.39812 NODE_58 18861 21039 – 0.0 9
FKP355.5445.1|m.39907 NODE_58 22161 25000 Protein with serine active lipase domain 0.0  
FKP355.5400.1|m.39579 NODE_581 1309 3097 Alcohol dehydrogenase 0.0 2
FKP355.5427.1|m.39610 NODE_587 60501 62936 Mfs general substrate transporter 17.2 5
FKP355.6195.1|m.45807 NODE_6 14226 14433 Hsp70-like protein 70.7 5
FKP355.6384.1|m.47130 NODE_740 6 1175 – 16.5  
FKP355.6380.1|m.47125 NODE_740 1269 1795 – 0.0  
FKP355.6381.1|m.47133 NODE_740 2062 2362 – 0.0 4
FKP355.6855.1|m.50863 NODE_797 49605 50628 Putative cation transporter 6.5  
FKP355.6832.1|m.50956 NODE_797 50984 52853 Cytochrome p450 alkane 0.0 6
FKP355.6828.1|m.50886 NODE_797 53013 54512 – 0.0  
FKP355.7207.1|m.53424 NODE_845 428661 429387 – 61.9 8
FKP355.7712.1|m.57224 NODE_87 2 1702 – 0.0 6
FKP355.7709.1|m.57217 NODE_872 12 192 – 0.0  
FKP355.7976.1|m.59101 NODE_94 816 1913 – 0.0 2
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