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Table 3 Putative gene involving lignin degradation of L1

From: Biodegradation of alkaline lignin by Bacillus ligniniphilus L1

Orf_name

Length (bp)

Encoding protein

gm_orf2082

3693

Multicopper oxidase

gm_orf357

1515

Multicopper oxidase

gm_orf140

750

Heme peroxidase

gm_orf845

501

Thioredoxin peroxidase

gm_orf2135

2058

Catalase-peroxidase

gm_orf545

195

Glycolate oxidase

gm_orf546

609

Glycolate oxidase

gm_orf548

108

Glycolate oxidase

gm_orf549

1071

Glycolate oxidase

gm_orf547

633

Glycolate oxidase

gm_orf2461

894

Superoxide dismutase

gm_orf2691

609

Superoxide dismutase

gm_orf3186

960

Catechol 2,3-dioxygenase

gm_orf726

852

Catechol 2,3-dioxygenase

gm_orf2069

981

Catechol 2,3-dioxygenase

gm_orf1879

822

Protocatechuate 2,3-dioxygenase

gm_orf1866

525

Biphenyl 2,3-dioxygenase

gm_orf1846

582

4-Hydroxybenzoate decarboxylase

gm_orf2090

582

4-Hydroxybenzoate decarboxylase

gm_orf2161

1035

Phenol hydroxylase

gm_orf2068

1215

Phenol hydroxylase

gm_orf2065

483

Phenol hydroxylase small subunit

gm_orf3648

1101

Aryl-alcohol dehydrogenase

gm_orf3660

1098

Aryl-alcohol dehydrogenase

gm_orf3713

1146

3-Hydroxybenzoate 6-monooxygenase

gm_orf129

1437

4-Hydroxyphenylacetate 3-monooxygenase

gm_orf1870

1215

4-Hydroxybenzoate 3-monooxygenase

gm_orf1914

1149

S-(hydroxymethyl)glutathione dehydrogenase

gm_orf3933

1137

S-(hydroxymethyl)glutathione dehydrogenase

gm_orf100

402

Glutathione transferase

gm_orf1871

933

5-Carboxy-2-hydroxymuconate-6-semialdehyde decarboxylase

gm_orf1873

1470

2-Hydroxymuconic semialdehyde dehydrogenase

gm_orf3707

1434

5-Carboxymethyl-2-hydroxymuconate delta-isomerase

gm_orf3527

885

5-Carboxymethyl-2-hydroxymuconate delta-isomerase

gm_orf1956

489

Salicylate 1-hydroxylase beta subunit

gm_orf3187

1578

4-Hydroxyphenylacetate 3-hydroxylase

gm_orf2162

1104

Methane/phenol/toluene monooxygenase

gm_orf3714

1113

Gentisate 1,2-dioxygenase

gm_orf3703

1119

Gentisate 1,2-dioxygenase

gm_orf1830

537

Gentisate 1,2-dioxygenase

gm_orf3117

1257

Phthalate 4,5-dioxygenase oxygenase subunit

gm_orf2759

1257

Phthalate 4,5-dioxygenase oxygenase subunit

gm_orf1962

1287

Phthalate 4,5-dioxygenase

gm_orf1829

1284

Phthalate 4,5-dioxygenase

gm_orf2094

1335

3-Chlorobenzoate-3,4-dioxygenase oxygenase subunit

gm_orf1964

984

Putative ring-cleaving dioxygenase mhqA

gm_orf1957

1248

Terephthalate 1,2-dioxygenase oxygenase large subunit

gm_orf1865

1353

Polycyclic aromatic hydrocarbon dioxygenase large subunit

gm_orf1409

552

2-Cys peroxiredoxin

gm_orf2729

369

Cytochrome c551

gm_orf521

408

Cytochrome c551

gm_orf1456

1827

K02274 cytochrome c oxidase subunit I

gm_orf1455

1041

Cytochrome c oxidase subunit II

gm_orf2949

1155

Aminodeoxychorismate lyase

gm_orf2519

744

Short chain dehydrogenase/reductase family oxidoreductase

gm_orf2443

1656

Cytochrome c biogenesis protein

gm_orf3584

486

Carbon-monoxide dehydrogenase small subunit

gm_orf178

363

Acetyl-CoA C-acetyltransferase

gm_orf2189

777

1489 enoyl-CoA hydratase/isomerase

gm_orf2421

294

Ferredoxin

gm_orf1543

840

Formate dehydrogenase accessory protein

gm_orf2481

1017

Luciferase-type oxidoreductase

gm_orf1315

1422

Dihydrolipoamide dehydrogenase

gm_orf59

1500

Malate dehydrogenase (quinone)