Microbial solvent formation revisited by comparative genome analysis

Poehlein, Anja; Solano, José David Montoya; Flitsch, Stefanie K.; Krabben, Preben; Winzer, Klaus; Reid, Sharon J.; Jones, David T.; Green, Edward; Minton, Nigel P.; Daniel, Rolf; Dürre, Peter

doi:10.1186/s13068-017-0742-z

Biotechnology for Biofuels and Bioproducts

Table 1 General features of newly sequenced strains

From: Microbial solvent formation revisited by comparative genome analysis

Organism	Type strain/industrial strain	Size (bp)	Scaffolds	GC content (%)	Coding percentage (%)	CDS	Genes	rRNA	tRNA	Coverage illumina/454	Sequencing platform	Read length illumina (bp)
Clostridium acetobutylicum DSM 1732	Industrial strain	4,091,215	55	30.69	86.96	3871	3934	2	60	251	Genome Analyzer IIx	2 × 112
Clostridium acetobutylicum NCCB 24020		4,098,731	20	30.71	87.17	3883	3970	8	78	157	MiSeq	2 × 300
Clostridium aurantibutyricum DSM 793T	Type strain	4,922,827	221	29.87	86.04	4492	4572	10	70	128	MiSeq	2 × 300
Clostridium beijerinckii 4J9		5,888,124	162	29.60	80.34	5200	5271	7	63	145	Genome Analyzer IIx	2 × 112
Clostridium beijerinckii ATCC 39058		5,953,339	302	29.57	80.32	5284	5297	1	11	233	HiSeq2000	2 × 100
Clostridium beijerinckii BAS/B2	Industrial strain	5,982,920	245	29.61	81.03	5235	5294	10	48	307	HiSeq2000	2 × 51
Clostridium beijerinckii BAS/B3/I/124	Industrial strain	6,123,550	1	29.87	80.56	5310	5435	43	77	123/15	Genome Analyzer IIx/454-GS FLX	2 × 112
Clostridium beijerinckii DSM 53		5,773,247	346	29.54	80.15	5057	5126	12	56	225	HiSeq2000	2 × 51
Clostridium beijerinckii DSM 791T	Type strain	5,781,472	264	29.66	79.99	5081	5184	16	86	131	MiSeq	2 × 300
Clostridium beijerinckii NCP 260	Industrial strain	5,968,330	242	29.61	81.03	5223	5286	8	54	228	HiSeq2000	2 × 51
Clostridium beijerinckii NRRL B-528		6,255,488	233	29.64	79.60	5554	5661	17	89	68	MiSeq	2 × 301
Clostridium beijerinckii NRRL B-591	Industrial strain	5,874,824	358	29.58	79.97	5162	5176	2	11	264	HiSeq2000	2 × 100
Clostridium beijerinckii NRRL B-593		6,156,662	305	29.57	79.74	5469	5525	7	49	192	HiSeq2000	2 × 100
Clostridium beijerinckii NRRL B-596		6,220,133	393	29.59	80.80	5531	5547	2	13	152	HiSeq2000	2 × 100
Clostridium beijerinckii 59B		6,485,394	1	30.00	78.79	5522	5670	49	93	800	HiSeq2000/454-GS FLX	2 × 51
Clostridium felsineum DSM 794T	Type strain	5,178,654	105	29.92	86.80	4745	4831	9	77	82	MiSeq	2 × 300
Clostridium pasteurianum DSM 525T	Type strain	4,352,101	1	29.94	82.54	3988	4099	30	81	70/17	MiSeq/454-GS FLX	2 × 51
Clostridium puniceum DSM 2619T	Type strain	6,082,167	245	28.61	80.07	5305	5373	13	54	103	MiSeq	2 × 300
Clostridium roseum DSM 6424		4,944,863	262	29.75	86.48	4510	4529	1	18	152	HiSeq2000	2 × 100
Clostridium roseum DSM 7320T	Type strain	5,067,725	124	29.80	87.35	4607	4687	8	72	84	MiSeq	2 × 300
Clostridium saccharobutylicum BAS/B3/SW/136	Industrial strain	5,108,304	1	28.67	78.90	4383	4521	37	93	123	Genome Analyzer IIx/454-GS FLX	2 × 112
Clostridium saccharobutylicum L1-8		5,173,344	16	28.60	78.97	4487	4596	28	80	157/10	HiSeq2000/454-GS FLX	2 × 51
Clostridium saccharobutylicum NCP 162	Industrial strain	4,900,327	142	28.46	78.95	4320	4381	8	52	198	Genome Analyzer IIx	2 × 112
Clostridium saccharobutylicum NCP 195	Industrial strain	5,108,176	1	28.66	78.81	4377	4514	37	89	198	Genome Analyzer IIx/454-GS FLX	2 × 112
Clostridium saccharobutylicum NCP 200	Industrial strain	5,108,287	1	28.67	78.86	4380	4518	37	91	92	Genome Analyzer IIx/454-GS FLX	2 × 112
Clostridium saccharobutylicum NCP 258	Industrial strain	4,950,933	1	28.66	78.67	4296	4436	37	85	111	HiSeq2000/454-GS FLX	2 × 51
Clostridium saccharobutylicum DSM 13864T	Type strain/industrial strain	5,107,814	1	28.66	79.15	4469	4593	37	85	100/29	HiSeq1000/454-GS FLX	2 × 32
Clostridium saccharoperbutylacetonicum N1-4 (HMT)T	Type strain/industrial strain	6,666,445	2	29.54	82.91	5821	5937	35	70	43/15	Genome Analyzer IIx/454-GS FLX	2 × 112
Clostridium saccharoperbutylacetonicum N1-504		6,219,394	2	29.55	83.02	5518	5622	34	60	113	HiSeq2000	2 × 50
Clostridium sp. BL-8		6,045,940	231	29.89	81.68	5450	5466	3	13	176	HiSeq2000	2 × 100

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ISSN: 2731-3654

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