sRNA | Location | Dir* | ∆G (kcal/mol) | 5′ gene | Annotation | Distance (bp) | 3′ gene | Annotation | Distance (bp) | Relative abundance | E24 | E48 |  |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
nc64 | 1,832,231–1,832,345 | <>> | −40.6 | sll1382 | Ferredoxin | 302 | slr1474 | Hypothetical protein | 15 | Nc64 (4.5S rRNA) | 1.01 | 0.51 |  |
nc18 | 552,943–553,017 | <<< | −16.8 | sll1635 | FAD-dependent thymidylate synthase | 76 | sml0005 | Photosystem II reaction center protein K | 48 | Nc18 (Ncl0200) | 0.965 | 0.837 |  |
nc1 | 2948–3061 | <>< | −14.1 | sll0558 | Hypothetical protein | 75 | sll1214 | Magnesium-protoporphyrin IX monomethyl ester cyclase | 131 | Nc1 | 0.881 | 1.274 |  |
nc121 | 3,316,752–3,317,151 | ><< | −108.3 | slr1464 | Hypothetical protein | 17 | ssl2667 | NifU protein | 212 | Nc121 (tmRNA) | 1.315 | 0.646 |  |
nc81 | 2,250,490–2,250,580 | ><> | −34.9 | ssr3307 | Preprotein translocase subunit SecG | 16 | slr1946 | Hypothetical protein | 131 | Nc81 | 1.133 | 3.577 |  |
nc110 | 3,138,648–3,138,738 | <<< | −18.2 | sll0737 | Hypothetical protein | 44 | sll0048 | Hypothetical protein | 179 | Nc110 (SyR5) | 1.19 | 2.171 |  |
nc26 | 842,648–842,758 | <<> | −40.5 | sll1799 | 50S ribosomal protein L3 | 35 | slr1894 | Hypothetical protein | 347 | Nc26 | 1.201 | 0.635 |  |
nc41 | 1,190,736–1,190,822 | <>> | −22.2 | sll1783 | Hypothetical protein | 353 | slr1852 | Hypothetical protein | 45 | Nc41 (Ncr0480) | 0.678 | 1.053 |  |
nc70 | 1,886,895–1,887,070 | >>< | −47.8 | slr1288 | Hypothetical protein | 158 | sll1166 | Hypothetical protein | 89 | Nc70 (6S rRNA) | 0.743 | 0.701 |  |
nc7 | 219,563–219,783 | <<< | −66.9 | sll1029 | Carbon dioxide concentrating mechanism protein CcmK | 46 | sll1027 | NADH-glutamate synthase small subunit | 196 | Nc7 | 1.303 | 0.632 |  |
nc122 | 3,323,090–3,323,230 | <>> | −25.8 | sll0629 | Photosystem I subunit X | 327 | slr0653 | RNA polymerase sigma factor RpoD | 45 | Nc122 (Ncr1650) | 1.042 | 0.848 |  |
nc60 | 1,748,923–1,749,070 | <<> | −44.8 | sll1247 | Hypothetical protein | 30 | slr1351 | UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamino-pimelate-d-alanyl-d-alanine ligase | 76 | Nc60 (SyR7) | 0.912 | 1.229 |  |
nc117 | 3,250,549–3,250,647 | >>> | −10.1 | slr0550 | Dihydrodipicolinate synthase | 262 | slr0551 | Hypothetical protein | 353 | Nc117 (Ncr1600) | 1.519 | 1.67 |  |
nc33 | 1,004,885–1,005,121 | <<< | −40.2 | sll1454 | Nitrate reductase | 108 | sll1453 | Nitrate transport protein NrtD | 60 | Nc33 | 1.607 | 0.815 |  |
nc85 | 2,383,750–2,383,875 | >>< | −42.3 | slr0381 | Hypothetical protein | 114 | sll0330 | 3-Ketoacyl-ACP reductase | 74 | Nc85 | 1.13 | 2.111 |  |
nc65 | 1,840,822–1,840,980 | <>< | −25.4 | sll1376 | Bifunctional sterol desaturase/short chain dehydrogenase | 331 | sll1374 | Melibiose carrier protein | 76 | Nc65 | 1.068 | 1.089 |  |
sRNA | E72 | B24 | B48 | B72 | H24 | H48 | H72 | S24 | S48 | S72 | N24 | N48 | N72 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
nc64 | 1.519 | 1.254 | 0.709 | 2.69 | 1.387 | 0.609 | 1.572 | 2.061 | 1.09 | 2.143 | 0.674 | 0.387 | 1.131 |
nc18 | 0.834 | 1.289 | 1.001 | 0.596 | 0.972 | 0.634 | 0.221 | 0.366 | 0.298 | 0.278 | 0.111 | 0.048 | 0.05 |
nc1 | 0.858 | 0.927 | 1.584 | 0.804 | 0.72 | 0.844 | 0.548 | 0.642 | 0.993 | 0.748 | 0.189 | 0.188 | 0.115 |
nc121 | 0.853 | 1.452 | 0.36 | 1.469 | 2.311 | 0.544 | 1.534 | 1.107 | 0.853 | 1.626 | 0.888 | 0.768 | 3.146 |
nc81 | 0.882 | 1.641 | 7.166 | 1.058 | 1.326 | 1.784 | 0.381 | 0.691 | 1.021 | 0.261 | 2.293 | 4.651 | 1.237 |
nc110 | 1.04 | 1.335 | 2.358 | 1.799 | 3.616 | 1.22 | 0.647 | 1.097 | 1.398 | 0.538 | 1.276 | 3.595 | 3.599 |
nc26 | 0.64 | 0.852 | 0.76 | 0.653 | 0.75 | 0.813 | 0.489 | 2.159 | 1.544 | 1.709 | 0.587 | 0.225 | 0.163 |
nc41 | 0.973 | 0.959 | 0.955 | 0.665 | 0.969 | 1.249 | 0.619 | 0.207 | 0.314 | 0.296 | 0.319 | 0.209 | 0.149 |
nc70 | 1.635 | 0.896 | 0.465 | 1.346 | 1.511 | 0.577 | 1.472 | 1.005 | 0.865 | 1.809 | 1.086 | 0.876 | 2.212 |
nc7 | 1.178 | 1.08 | 0.454 | 0.981 | 1.001 | 0.572 | 1.259 | 1.193 | 1.054 | 2.444 | 0.398 | 0.311 | 1.158 |
nc122 | 1.031 | 0.864 | 0.968 | 0.823 | 0.723 | 0.875 | 1.059 | 0.58 | 0.768 | 0.677 | 1.531 | 1.263 | 1.962 |
nc60 | 1.078 | 0.504 | 0.73 | 0.506 | 0.979 | 0.512 | 0.365 | 0.179 | 0.201 | 0.26 | 1.438 | 0.965 | 0.573 |
nc117 | 1.293 | 1.743 | 1.623 | 1.035 | 1.101 | 0.851 | 0.866 | 2.083 | 1.12 | 1.12 | 0.875 | 1.061 | 1.404 |
nc33 | 1.282 | 2.254 | 0.773 | 1.172 | 1.239 | 0.905 | 0.788 | 4.606 | 2.041 | 3.843 | 3.152 | 3.674 | 4.558 |
nc85 | 1.39 | 1.305 | 2.13 | 1.212 | 0.898 | 0.964 | 0.472 | 1.077 | 1.402 | 0.769 | 4.358 | 4.151 | 3.34 |
nc65 | 0.927 | 1.165 | 1.148 | 0.987 | 1.223 | 0.99 | 0.857 | 1.044 | 1.129 | 0.94 | 1.392 | 1.526 | 1.364 |