De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

Table 1 Statistics of the leaf transcriptome pre-assemblies and the final de novo assembly of A. donax

Summary statistics of the A. donax pre-assemblies using Trinity, rnaSPAdes, and Trans-AbySS, and of the final A. donax leaf transcriptome after clustering and redundancy removal
^aTrinity: K-mer 25
^brnaSPAdes: K-mer 21, 33
^cTrans-ABySS: K-mer 17, 21, 25; the minimum transcript length was set to 200 bp

ISSN: 2731-3654