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Table 2 Percentage of reads mapped back to A. donax leaf transcriptome

From: De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

  Aligner
Bowtie2 BWA
Reads aligned 1 time (%) 40.09 42.53.38
Reads aligned >1 times (%) 34.18 25.82
Overall alignment rate (%) 74.27 68.35
  1. Percentage of reads uniquely mapped, aligned more than one time to the unitranscripts, and overall alignment rate using Bowtie2 and BWA aligners