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Table 2 Percentage of reads mapped back to A. donax leaf transcriptome

From: De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

 

Aligner

Bowtie2

BWA

Reads aligned 1 time (%)

40.09

42.53.38

Reads aligned >1 times (%)

34.18

25.82

Overall alignment rate (%)

74.27

68.35

  1. Percentage of reads uniquely mapped, aligned more than one time to the unitranscripts, and overall alignment rate using Bowtie2 and BWA aligners
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Biotechnology for Biofuels and Bioproducts

ISSN: 2731-3654

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