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Table 4 Overview of functional annotation by homology

From: De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

Category

No. of transcripts

Predicted ORFs

98,781

Predicted proteins

83,758

Tr_EMBL_Top_BLASTX_hit

50,850

sprot_Top_BLASTX_hit

34,177

Tr_EMBL_Top_BLASTP_hit

54,660

sprot_Top_BLASTP_hit

33,597

Pfam

31,513

SignalP

2729

  1. Summary of the functional annotation by homology
  2. ORFs, open reading frames; Tr_EMBL_Top_BLASTX_hit, top blastx hits against UniRef90 database; sprot_Top_BLASTX_hit, top blastx hits against UniProtKB/Swiss-Prot database; Tr_EMBL_Top_BLASTP_hit, top blastp hits against UniRef90 database; sprot_Top_BLASTP_hit, top blastp hits against UniProtKB/Swiss-Prot database; Gene_ontology_blast, gene ontology using Blast; Gene_ontology_pfam, gene ontology using Pfam
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Biotechnology for Biofuels and Bioproducts

ISSN: 2731-3654

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