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Table 4 Overview of functional annotation by homology

From: De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

Category No. of transcripts
Predicted ORFs 98,781
Predicted proteins 83,758
Tr_EMBL_Top_BLASTX_hit 50,850
sprot_Top_BLASTX_hit 34,177
Tr_EMBL_Top_BLASTP_hit 54,660
sprot_Top_BLASTP_hit 33,597
Pfam 31,513
SignalP 2729
  1. Summary of the functional annotation by homology
  2. ORFs, open reading frames; Tr_EMBL_Top_BLASTX_hit, top blastx hits against UniRef90 database; sprot_Top_BLASTX_hit, top blastx hits against UniProtKB/Swiss-Prot database; Tr_EMBL_Top_BLASTP_hit, top blastp hits against UniRef90 database; sprot_Top_BLASTP_hit, top blastp hits against UniProtKB/Swiss-Prot database; Gene_ontology_blast, gene ontology using Blast; Gene_ontology_pfam, gene ontology using Pfam