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Table 6 Comparison between A. donax transcriptome and S. italica transcripts for lignin biosynthesis

From: De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

Gene symbol Gene name Accession no.a Species No. of A. donax transcripts
PAL Phenylalanine ammonia-lyase Seita.1G240400.1 S. italica 13
CCoAOMT Caffeoyl-CoA 3-O-methyl-transferase Seita.6G197700.1 S. italica 1
CCR Cinnamoyl-CoA reductase Seita.2G256200.1 S. italica 1
CAD Hydroxycinnamyl alcohol dehydrogenase Seita.1G057300.1 S. italica 1
COMT Caffeate O-methyltransferase Seita.6G059400.1 S. italica 3
F5H Ferulate 5-hydroxylase Seita.9G193900.1 S. italica 5
HCT Hydroxycinnamoyl transferase Seita.7G155700.1 S. italica 7
C3H Trans-cinnamate 3-hydroxylase Seita.3G194300.1 S. italica 6
C4H Trans-cinnamate 4-hydroxylase Seita.5G361200.1 S. italica 8
4CL 4 coumarate CoA-ligase Seita.6G093400.1 S. italica 3
  1. A total of ten S. italica transcripts involved in lignin biosynthesis showed homology with A. donax transcripts
  2. aPhytozome (v11.0) accession numbers