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Fig. 1 | Biotechnology for Biofuels

Fig. 1

From: Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

Fig. 1

T. reesei scaffold reassembly in seven chromosomes. T. reesei scaffolds from the JGI reference genome have been reassembled using chromosomal conformation capture (3C) sequencing data. a Contact matrix resulting from GRAAL reassembly. Red bars indicate the boundaries of the seven chromosome; centromere positions are represented by blue dots. b Order and orientation of the reassembled scaffolds in the seven chromosomes. Orientation uncertainties are noted with a question mark. Scaffolds 1, 2, 5, and 28 that were misassembled in the reference genome are shown in green, blue, orange, and red, respectively. Centromere positions are represented by blue dots

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