Table 2 T. reesei QM6a centromeres
From: Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes
Chr | Location on chr (Mb) | Between scaffolds | Scaffolds involved | Size (kb) | %AT | Nb of genes (gene IDs) |
|---|---|---|---|---|---|---|
Scaffolds with centromere signature reassembled in chromosomes | ||||||
chr I | 3.12 | 21(−) and 4(+) | 55 | 34 | 77.9 | 4 (112,674, 112,675, 112,676, 112,677) |
chr II | 1.93 | 10(−) and 8(+) | 66 + 59 | 30 | 70.0 | 3 (71,146, 43,199, 42,942) |
chr III | 1.71 | 40(+) and 2a(−) | Unknown | |||
chr IV | 1.48 | 17(+) and 20(−) | 56 | 32 | 74.2 | 2 (112,678, 112,679) |
chr V | 1.12 | 18(+) and 28a(−) | 60 + 61 | 32 | 77.0 | 1 (112,683) |
chr VI | 1.67 | 37(+) and 39(+) | 51 | 43 | 76.3 | 2 (112,649, 73,103) |
chr VII | 1.73 | 16(−) and 3(−) | 52 | 41 | 76.7 | 1 (112,651) |
Other scaffolds with centromere signature but not reassembled | ||||||
57 | 26 | 76.6 | 0 | |||
58 | 21 | 78.7 | 3 (112,680, 112,681, 112,682) | |||
65 | 13 | 81.7 | 1 (112,689) | |||