Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

Table 5 Statistics on chromosome fragments

Strain	Chromosome	Fragment size (kb)	Nb of genes
CBS 999.97 (1-1, re)	chr II => chr IV (D-segment)	539	167 genes
CBS 999.97 (1-1, re)	chr IV => chr II (L-segment)	33	11 genes
QM9414 & QM9123	chr I => chr II	2321	634 genes
	chr II => chr I	1096	322 genes
	chr II => chr VI	192	63 genes
	chr VI => chr I	1329	369 genes
QM9978	chr V => chr VII	2374	644 genes
QM9978	chr VII => chr V	1077	290 genes
Rut-C30	chr I => chr III	1133	309 genes
	chr I => chr VI	1630	442 genes
	chr III => chr III	1976	485 genes
	chr VI => chr I	402	114 genes

For each of the breakpoint described in Tables 3 and 4, the size and number of genes of the resulting chromosome fragment (from the breakpoint to the telomere or to the next breakpoint) were calculated. The only dispensable fragment is the L-segment described in CBS999.97 (1-1, re) [10]

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