Table 1 Sequences and PSSM informational scores (bits) of putative GlyR3 binding sites
From: The LacI family protein GlyR3 co-regulates the celC operon and manB in Clostridium thermocellum
Sequences | Absolute position | Genes | PSSM score (bits) | Number of palindrome positions |
|---|---|---|---|---|
TGAAAGC|GCTTTCAa | Optimum sequence based on B. subtlis | 31.92 | 7 | |
TGAACGC|GCGTACAb | 3308248..3308261 | celC (Cthe_2807) | 9.18 | 6 |
TGTAAAC|GGTGTCA | 3317291..3317304 | manB (Cthe_2811) | 14.62 | 4 |
GTAAATC|GGTTGCA | 3318880..3318893 | celT (Cthe_2812) | 5.78 | 3 |
Average over the C. thermocellum genome | −14.08 | – | ||