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Table 1 Comparison of different glycosyl residue analysis methods for μg monosaccharide quantified per mg of AIR from four different leaf samples

From: Comparison of four glycosyl residue composition methods for effectiveness in detecting sugars from cell walls of dicot and grass tissues

Leaf-method

μg glycosyl residue/mg leaf AIR

Ara

Rha

Fuc

Xyl

GlcA

GalA

Man

Gal

Glc

Total neutral

Total acidic

Total

Arabidopsis

 Alditol acetate

21.8 ± 0.8

13.3 ± 0.7

3.5 ± 0.3

23.9 ± 1.3

5.2 ± 0.3

38.6 ± 2.3

14.0 ± 0.6

120.3

 

120.3

 Uronic acid*

108.6 ± 3.2

 

108.6

 

 Alditol acetate + uronic acid**

21.8 ± 0.8a

13.3 ± 0.7a

3.5 ± 0.3b

23.9 ± 1.3a

108.6 ± 3.2

5.2 ± 0.3b

38.6 ± 2.3a

14.0 ± 0.6a

120.3a

108.6c

228.9a

 Carbodiimide

27.4 ± 1.8b

23.5 ± 1.5c

2.7 ± 0.02a

32.7 ± 1.4b

1.7 ± 0.01

64.8 ± 4.1b

4.8 ± 0.3a

46.6 ± 2.1c

26.1 ± 1.3b

163.8b

66.5a

230.2b

 TMS

29.2 ± 2.2c

22.1 ± 1.9b

3.5 ± 0.03b

32.2 ± 1.1b

1.9 ± 0.02

72.5 ± 3.3b

5.2 ± 0.5a

42.3 ± 2.6b

24.3 ± 2.2b

158.8b

74.4b

233.1b

 HPAEC

27.4 ± 1.4b

20.0 ± 1.0b

3.3 ± 0.02b

35.5 ± 1.5c

1.8 ± 0.01

62.4 ± 3.9a

8.9 ± 0.7c

41.0 ± 2.8b

23.4 ± 1.6b

159.5b

64.2a

223.6a

Populus

 Alditol acetate

55.2 ± 3.8

13.6 ± 0.7

5.3 ± 0.2

41.5 ± 2.6

3.9 ± 0.4

35.7 ± 2.5

20.5 ± 0.8

175.7

 

175.7

 Uronic acid*

91.4 ± 4.1

 

91.4

 

 Alditol acetate + uronic acid**

55.2 ± 3.8a

13.6 ± 0.7

5.36 ± 0.2

41.5 ± 2.6a

91.4 ± 4.1

3.9 ± 0.4a

35.7 ± 2.5b

20.5 ± 0.8

175.7a

91.4c

267.1a

 Carbodiimide

98.1 ± 5.1b

11.2 ± 0.7

5.1 ± 0.2

51.5 ± 2.9b

0.9 ± 0.01

29.5 ± 3.1b

3.6 ± 0.3a

44.6 ± 2.9c

21.2 ± 1.3

235.3b

30.4a

265.7a

 TMS

99.2 ± 4.9b

12.4 ± 0.9

5.9 ± 0.4

54.1 ± 3.2b

1.0 ± 0.01

32.8 ± 2.9b

5.1 ± 0.4b

42.3 ± 2.1c

20.2 ± 1.8

239.2b

33.8b

272.8b

 HPAEC

95.7 ± 6.3b

10.6 ± 0.8

4.2 ± 0.3

60.3 ± 4.1c

0.7 ± 0.01

25.6 ± 2.6a

8.6 ± 0.6c

34.3 ± 1.8a

19.7 ± 1.4

233.4b

26.3a

259.7a

Rice

 Alditol acetate

64.1 ± 3.9

2.8 ± 0.1

0.7 ± 0.02

220.3 ± 8.9

 -

 -

1.3 ± 0.01

16.5 ± 1.1

31.1 ± 2.4

336.8

 

336.8

 Uronic acid*

 -

 -

 -

 -

12.1 ± 0.9

 -

 -

 -

 

12.1

 

 Alditol acetate + uronic acid**

64.1 ± 3.9a

2.8 ± 0.1

0.7 ± 0.02

220.3 ± 8.9b

12.1 ± 0.9

1.3 ± 0.01a

16.5 ± 1.1b

31.1 ± 2.4b

336.8a

12.1c

348.9c

 Carbodiimide

70.3 ± 3.6b

3.1 ± 0.3

0.5 ± 0.01

212.3 ± 9.3a

1.1 ± 0.20

4.3 ± 0.4b

1.2 ± 0.02a

11.6 ± 0.8a

34.3 ± 2.8b

333.3a

5.4a

338.5a

 TMS

73.4 ± 4.2b

2.8 ± 0.3

0.4 ± 0.01

214.5 ± 11.3a

1.2 ± 0.02

4.9 ± 0.4b

2.0 ± 0.01a

11.4 ± 0.9a

33.5 ± 1.9b

338.0a

6.1b

343.9b

 HPAEC

75.3 ± 5.8c

2.9 ± 0.2

0.8 ± 0.02

228.9 ± 14.3c

0.6 ± 0.01

3.6 ± 0.3a

3.1 ± 0.04b

10.8 ± 0.6a

25.6 ± 2.1a

347.2b

4.4a

351.6c

Switchgrass

 Alditol acetate

71.3 ± 2.4

2.5 ± 0.3

1.0 ± 0.02

281.0 ± 13.3

 -

 -

1.4 ± 0.02

15.8 ± 1.6

50.2 ± 4.1

423.2

 

423.2

 Uronic acid*

 -

 -

 -

 -

4.5 ± 0.4

 -

-  

 -

 

4.5

 

 Alditol acetate + uronic acid**

71.3 ± 2.4a

2.5 ± 0.3

1.0 ± 0.02b

281.0 ± 13.3a

4.5 ± 0.4

1.4 ± 0.02a

15.8 ± 1.6c

50.2 ± 4.1c

423.2a

4.5

427.7a

 Carbodiimide

75.8 ± 3.3a

2.5 ± 0.3

0.6 ± 0.01a

290.8 ± 12.7b

0.8 ± 0.01

3.6 ± 0.2a

2.0 ± 0.02b

12.6 ± 0.7b

43.7 ± 3.9b

428.0a

4.4

432.3a

 TMS

80.3 ± 5.1b

2.7 ± 0.4

0.8 ± 0.01b

295.3 ±  ± 13.8b

0.9 ± 0.01

4.1 ± 0.4b

1.0 ± 0.01a

11.9 ± 1.0b

45.3 ± 3.5b

437.3b

5.0

442.3b

 HPAEC

84.0 ±  ± 3.7b

2.0 ± 0.2

0.6 ± 0.01a

299.3 ± 15.8b

0.9 ± 0.01

3.0 ± 0.3a

2.3 ± 0.02b

9.0 ± 0.9a

36.0 ± 2.8a

433.2b

3.9

437.1b

  1. Data are means of three biological replicates ± standard deviation, with two technical replicates for alditol acetate, carbodiimide, and TMS methods (n = 6), three technical replicates for uronic acid assay (n = 9), and a single technical replicate for HPAEC method (n = 3). Different letters in superscript following the values indicate significant differences between the amounts (“a” represents the lowest amount) of a particular (or total) sugar residue in the cell walls of a species across different methods (and not between different types of sugars within that leaf sample analyzed using a particular method). Statistics are one-way analysis of variance (ANOVA) followed by Tukey’s multiple comparison tests with significant P value <0.05
  2. * Uronic acid assay data shown here are from analysis using TFA hydrolysis
  3. ** Alditol acetate + uronic acid data shown here are the combined data of the respective individual assays