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Table 2 Primers used in the experiments

From: Impairment of NADH dehydrogenase and regulation of anaerobic metabolism by the small RNA RyhB and NadE for improved biohydrogen production in Enterobacter aerogenes

Primers

Oligonucleotide sequence (from 5′ to 3′)

PCR fragment

Source

F-CDuh

CCCTGCAACTTCGGCCTGTCA

Upstream-homologous arm of nuoB

This study

R-CDuh

TGATTCTCGTGCATTTAAATCTCGTCCGGTGT

This study

F-CDdh

ACCGGACGAGATTTAAATGCACGAGAATCAAC

Downstream-homologous arm of nuoE

This study

R-CDdh

CTGCTCCAACAGGTCAGGAATCG

This study

F-CDEuh

AGCAAGAAGTCAATAAAAGCGT

Upstream-homologous arm of nuoB

This study

R-CDEuh

ATCACTGTCTTCATTTAAATCTCGTCCGGTGT

This study

F-CDEdh

CGAGATTTAAATGAAGACAGTGATCCGCA

Downstream-homologous arm of nuoF

This study

R-CDEdh

ACGGCCTTCAAGGGAGTTAATC

This study

F-nuoCD

TCCTAGGTATAATACTAGTGGCGAACTGCGCAATCGTTTTGGGTTTTAGAGCTAGAAATAGC

nuoCD-N20

This study

R-nuoCD

ACTAGTATTATACCTAGGACTGAGCTAGCTGTCAAG

This study

F-nadE

CCGGAATTCATGACGCTACAACAAGAGATT

nadE ORF fragment

This study

R-nadE

CCCAAGCTTCTATTTTTTCCAGAAATCGTC

This study

F-p102-Chol

TGCACGGTGCACAGTGCCAAGC TTGCATGCCT

Chol ORF fragment

This study

R-p102-Chol

CGGCATGACTCCCCGTCAGTATACACTCCGCTAGCGC

This study

  1. Relevant restriction enzyme sites are underlined and in italics