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Table 1 Metatranscriptome sequencing and processing metrics

From: Targeted metatranscriptomics of compost-derived consortia reveals a GH11 exerting an unusual exo-1,4-β-xylanase activity

 

Week 1

Week 2

Week 3

Week 4

Week 5

Total

Total reads generated

20,119,184

14,715,430

7,767,801

5,879,612

17,825,076

66,307,103

Reads after quality filtering

15,916,667

12,072,389

6,757,570

5,111,343

14,535,407

54,393,376

mRNA reads

12,645,050

10,652,024

3,608,818

3,971,178

11,004,487

41,881,555

Assembled transcripts

104,408

64,923

27,821

34,023

71,786

302,961

N50

947

888

789

817

858

912

Average size

963

921

820

847

884

887

Predicted open reading frames

104,425

59,885

23,156

31,198

64,692

283,356

Lignocellulose active

3012

1523

534

654

1473

7196