Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea

Table 1 Comparison of the numbers of CAZymes in M. cinnamomea with those in other fungi

Phylum	Species	GH	GT	PL	CE	AA	CBM	All
ASC	Yarrowia lipolytica ^a	42	45	0	1	10	8	106
	Saccharomyces cerevisiae ^a	45	65	0	2	6	15	133
	Kluyveromyces lactis ^a	47	63	0	1	0	11	122
	Arthrobotrys oligospora ^a	205	87	15	30	33	180	550
	Malbranchea cinnamomea ^b	137	62	4	24	42	32	301
	Penicillium chrysogenum ^a	222	103	9	22	22	51	429
	Aspergillus nidulans ^a	264	92	21	31	33	44	485
	Aspergillus niger ^a	253	121	8	23	68	55	528
	Aspergillus oryzae ^a	307	117	23	29	30	37	543
	Leptosphaeria maculans ^a	220	98	19	33	33	53	456
	Thielavia terrestris ^a	212	91	4	28	58	80	473
	Myceliophthora thermophila ^a	195	87	8	28	50	50	418
	Podospora anserina ^a	213	92	8	41	105	104	563
	Neurospora crassa ^a	174	78	4	22	35	42	355
	Magnaporthe grisea ^a	265	105	4	52	92	114	632
	Fusarium graminearum ^a	253	110	21	45	72	87	588
BAS	Rhodosporidium toruloides ^a	75	101	4	10	17	11	218
	Sporisorium reilianum ^a	104	66	3	12	21	6	212
	Schizophyllum commune ^c,d	237	77	5	40	70	39	468
	Piriformospora indica ^a	206	73	16	45	57	141	538
	Phanerochaete chrysosporium ^e,f	170	70	1	20	81	71	413
	Postia placenta ^g,h	174	102	2	22	22	22	344
ZYG	Rhizopus oryzae ^i,j	123	145	6	48	10	38	370
OOM	Phytophthora infestans ^a	283	157	67	21	0	37	565

ASC Ascomycota, BAS Basidiomycota, ZYG Zygomycota, OOM Oomycota
^a[7]; ^bthis study; ^c[76]; ^d[77]; ^e[78]; ^f[79]; ^g[80]; ^h[81]; ⁱ[48]; ^j[82]