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Table 2 The 40 most highly expressed genes encoding putatively secreted CAZymes in M. cinnamomea FCH 10.5

From: Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea

Gene ID fpkma Domainb Putative functionc
a) Wheat bran
 MalCi_235.14 3225 GH72 β1,3-glucanosyltransferase
 MalCi_655.10 2516 GH2 β-galactosidase
 MalCi_664.5 2102 CE5 Cutinase
 MalCi_372.12 1816 GH17 β1,3-glucosidase
 MalCi_266.5 1377 GH17 β1,3-glucosidase
 MalCi_695.20 1325 GH16-CBM18 Chitinase
 MalCi_179.14 1310 GH132 β-glucosidase
 MalCi_724.6 1052 AA11 LPMO
 MalCi_790.1 848 GH47 α1,2-mannosidase
 MalCi_808.35 712 CE5 Cutinase
 MalCi_670.57 658 GH71-GH71 endo-α1,3-glucanase
 MalCi_652.31 589 GH132 β1,3-glucanase
 MalCi_489.39 511 GH5 endo-β1,4-glucanase
 MalCi_460.6 409 GH7 Cellobiohydrolase
 MalCi_646.16 406 GH5 endo-β1,4-mannosidase
 MalCi_757.11 393 GH16 endo-β1,3/1,4-glucanase
 MalCi_655.13 259 GH13 α-amylase
 MalCi_617.15 227 GH11 endo-β1,4-xylanase
 MalCi_646.9 199 AA6 1,4-benzoquinone reductase
 MalCi_780.39 197 GH6 Cellobiohydrolase
 MalCi_624.16 191 GH16 Glucanase
 MalCi_504.4 176 GH5 endo-β1,4-mannosidase
 MalCi_739.16 172 AA9 LPMO
 MalCi_769.3 172 AA11 LPMO
 MalCi_091.4 170 GH20 β-hexosaminidase
 MalCi_695.4 159 CE5 Cutinase
 MalCi_618.6 147 PL1 Pectate lyase
 MalCi_667.7 144 GH74-GH47 endo-β1,4-glucanase
 MalCi_652.77 123 PL3 Pectate lyase
 MalCi_435.17 122 GH18-CBM50-CBM50-CBM18 Chitinase
 MalCi_700.10 110 GH65 α,α-trehalase
 MalCi_528.12 103 GH18 Chitinase
 MalCi_123.8 98 AA9 LPMO
 MalCi_398.1 94 GH55-GH55 β1,3-glucosidase
 MalCi_219.18 92 PL1 Pectate lyase
 MalCi_177.6 88 AA1 Multicopper oxidase
 MalCi_787.11 86 AA7 Glucooligosaccharide oxidase
 MalCi_534.8 82 GH7 endo-β1,4-glucanase
 MalCi_596.9 82 AA6 1,4-benzoquinone reductase
 MalCi_675.5 77 CE5 Cutinase
b) Beechwood xylan
 MalCi_646.9 4912 AA6 1,4-benzoquinone reductase
 MalCi_235.14 3648 GH72 β1,3-glucanosyltransferase
 MalCi_617.15 3059 GH11 endo-β1,4-xylanase
 MalCi_372.12 1951 GH17 β1,3-glucosidase
 MalCi_266.5 1849 GH17 β1,3-glucosidase
 MalCi_655.10 1667 GH2 β-galactosidase
 MalCi_179.14 1368 GH132 β-glucosidase
 MalCi_670.57 1092 GH71-GH71 endo-α1,3-glucanase
 MalCi_790.1 943 GH47 α1,2-mannosidase
 MalCi_724.6 734 AA11 LPMO
 MalCi_695.20 663 GH16-CBM18 Chitinase
 MalCi_769.3 624 AA11 LPMO
 MalCi_435.17 425 GH18-CBM50-CBM50-CBM18 Chitinase
 MalCi_757.11 419 GH16 endo-β1,3/1,4-glucanase
 MalCi_652.31 223 GH132 β1,3-glucanase
 MalCi_219.18 211 PL1 Pectate lyase
 MalCi_618.6 188 PL1 Pectate lyase
 MalCi_588.8 174 GH10-CBM1 endo-β1,4-xylanase
 MalCi_652.77 170 PL3 Pectate lyase
 MalCi_700.10 149 GH65 α,α-trehalase
 MalCi_646.16 144 GH5 endo-β1,4-mannosidase
 MalCi_596.9 134 AA6 1,4-benzoquinone reductase
 MalCi_298.13 133 GH18 Chitinase
 MalCi_398.1 129 GH55-GH55 β1,3-glucosidase
 MalCi_808.35 128 CE5 Cutinase
 MalCi_667.7 116 GH74-GH47 endo-β1,4-glucanase
 MalCi_460.6 111 GH7 Cellobiohydrolase
 MalCi_795.24 81 GH20 β-hexosaminidase
 MalCi_666.7 81 GH24 Lysozyme
 MalCi_091.4 73 GH20 β-hexosaminidase
 MalCi_528.12 69 GH18 Chitinase
 MalCi_695.4 68 CE5 Cutinase
 MalCi_739.16 67 AA9 LPMO
 MalCi_780.39 62 GH6 Cellobiohydrolase
 MalCi_664.5 55 CE5 Cutinase
 MalCi_682.37 54 GH2 exo-β-glucosaminidase
 MalCi_177.6 53 AA1 Multicopper oxidase
 MalCi_624.16 53 GH16 Glucanase
 MalCi_381.4 49 GT31 Chondroitin sulphate synthase
 MalCi_787.11 47 AA7 Glucooligosaccharide oxidase
  1. aNormalised expression level of transcripts, average of two biological replicates
  2. bCAZy domain as predicted by dbCAN 5.0
  3. cPutative function deduced from first hit in BLASTp search against UniprotKB/Swiss-prot database