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Table 2 The 40 most highly expressed genes encoding putatively secreted CAZymes in M. cinnamomea FCH 10.5

From: Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea

Gene ID

fpkma

Domainb

Putative functionc

a) Wheat bran

 MalCi_235.14

3225

GH72

β1,3-glucanosyltransferase

 MalCi_655.10

2516

GH2

β-galactosidase

 MalCi_664.5

2102

CE5

Cutinase

 MalCi_372.12

1816

GH17

β1,3-glucosidase

 MalCi_266.5

1377

GH17

β1,3-glucosidase

 MalCi_695.20

1325

GH16-CBM18

Chitinase

 MalCi_179.14

1310

GH132

β-glucosidase

 MalCi_724.6

1052

AA11

LPMO

 MalCi_790.1

848

GH47

α1,2-mannosidase

 MalCi_808.35

712

CE5

Cutinase

 MalCi_670.57

658

GH71-GH71

endo-α1,3-glucanase

 MalCi_652.31

589

GH132

β1,3-glucanase

 MalCi_489.39

511

GH5

endo-β1,4-glucanase

 MalCi_460.6

409

GH7

Cellobiohydrolase

 MalCi_646.16

406

GH5

endo-β1,4-mannosidase

 MalCi_757.11

393

GH16

endo-β1,3/1,4-glucanase

 MalCi_655.13

259

GH13

α-amylase

 MalCi_617.15

227

GH11

endo-β1,4-xylanase

 MalCi_646.9

199

AA6

1,4-benzoquinone reductase

 MalCi_780.39

197

GH6

Cellobiohydrolase

 MalCi_624.16

191

GH16

Glucanase

 MalCi_504.4

176

GH5

endo-β1,4-mannosidase

 MalCi_739.16

172

AA9

LPMO

 MalCi_769.3

172

AA11

LPMO

 MalCi_091.4

170

GH20

β-hexosaminidase

 MalCi_695.4

159

CE5

Cutinase

 MalCi_618.6

147

PL1

Pectate lyase

 MalCi_667.7

144

GH74-GH47

endo-β1,4-glucanase

 MalCi_652.77

123

PL3

Pectate lyase

 MalCi_435.17

122

GH18-CBM50-CBM50-CBM18

Chitinase

 MalCi_700.10

110

GH65

α,α-trehalase

 MalCi_528.12

103

GH18

Chitinase

 MalCi_123.8

98

AA9

LPMO

 MalCi_398.1

94

GH55-GH55

β1,3-glucosidase

 MalCi_219.18

92

PL1

Pectate lyase

 MalCi_177.6

88

AA1

Multicopper oxidase

 MalCi_787.11

86

AA7

Glucooligosaccharide oxidase

 MalCi_534.8

82

GH7

endo-β1,4-glucanase

 MalCi_596.9

82

AA6

1,4-benzoquinone reductase

 MalCi_675.5

77

CE5

Cutinase

b) Beechwood xylan

 MalCi_646.9

4912

AA6

1,4-benzoquinone reductase

 MalCi_235.14

3648

GH72

β1,3-glucanosyltransferase

 MalCi_617.15

3059

GH11

endo-β1,4-xylanase

 MalCi_372.12

1951

GH17

β1,3-glucosidase

 MalCi_266.5

1849

GH17

β1,3-glucosidase

 MalCi_655.10

1667

GH2

β-galactosidase

 MalCi_179.14

1368

GH132

β-glucosidase

 MalCi_670.57

1092

GH71-GH71

endo-α1,3-glucanase

 MalCi_790.1

943

GH47

α1,2-mannosidase

 MalCi_724.6

734

AA11

LPMO

 MalCi_695.20

663

GH16-CBM18

Chitinase

 MalCi_769.3

624

AA11

LPMO

 MalCi_435.17

425

GH18-CBM50-CBM50-CBM18

Chitinase

 MalCi_757.11

419

GH16

endo-β1,3/1,4-glucanase

 MalCi_652.31

223

GH132

β1,3-glucanase

 MalCi_219.18

211

PL1

Pectate lyase

 MalCi_618.6

188

PL1

Pectate lyase

 MalCi_588.8

174

GH10-CBM1

endo-β1,4-xylanase

 MalCi_652.77

170

PL3

Pectate lyase

 MalCi_700.10

149

GH65

α,α-trehalase

 MalCi_646.16

144

GH5

endo-β1,4-mannosidase

 MalCi_596.9

134

AA6

1,4-benzoquinone reductase

 MalCi_298.13

133

GH18

Chitinase

 MalCi_398.1

129

GH55-GH55

β1,3-glucosidase

 MalCi_808.35

128

CE5

Cutinase

 MalCi_667.7

116

GH74-GH47

endo-β1,4-glucanase

 MalCi_460.6

111

GH7

Cellobiohydrolase

 MalCi_795.24

81

GH20

β-hexosaminidase

 MalCi_666.7

81

GH24

Lysozyme

 MalCi_091.4

73

GH20

β-hexosaminidase

 MalCi_528.12

69

GH18

Chitinase

 MalCi_695.4

68

CE5

Cutinase

 MalCi_739.16

67

AA9

LPMO

 MalCi_780.39

62

GH6

Cellobiohydrolase

 MalCi_664.5

55

CE5

Cutinase

 MalCi_682.37

54

GH2

exo-β-glucosaminidase

 MalCi_177.6

53

AA1

Multicopper oxidase

 MalCi_624.16

53

GH16

Glucanase

 MalCi_381.4

49

GT31

Chondroitin sulphate synthase

 MalCi_787.11

47

AA7

Glucooligosaccharide oxidase

  1. aNormalised expression level of transcripts, average of two biological replicates
  2. bCAZy domain as predicted by dbCAN 5.0
  3. cPutative function deduced from first hit in BLASTp search against UniprotKB/Swiss-prot database