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Table 3 Comparison of cellulose machinery across four gut fungal strains

From: Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus

  Number of transcripts (# dockerin containing transcripts)a
C. churrovis N. californiae A. robustus P. finnis
Hemicellulases
 GH11–12 63 (6) 67 (15) 30 (8) 35 (9)
 GH11 60 (6) 59 (14) 30 (8) 31 (9)
 GH43 59 (10) 35 (15) 16 (12) 11 (9)
 GH10 15 (2) 67 (25) 15 (6) 16 (7)
 GH39 3 (2) 9 (8) 4 (4) 1 (1)
 GH30 2 (2) 2 (1) 2 (2) 1 (1)
Accessory enzymes
 Carbohydrate esterase 47 (1) 43 (7) 28 (3) 22 (5)
 Pectin lyase 45 (2) 35 (0) 5 (0) 9 (0)
 Polysaccharide deacetylase 42 (1) 93 (2) 58 (2) 48 (2)
 Rhamnogalacturonate lyase 4 (3) 4 (1) 3 (1) 2 (1)
 Pectinesterase 4 (0) 12 (0) 5 (0) 6 (0)
 GH88 0 (0) 2 (2) 0 (0) 1 (1)
Cellulases
 GH9 29 (11) 25 (13) 15 (9) 12 (9)
 GH6 27 (8) 22 (18) 5 (3) 8 (7)
 GH45 26 (12) 24 (14) 13 (7) 11 (7)
 GH48 25 (5) 24 (17) 7 (5) 14 (7)
 GH1 20 (0) 16 (0) 11 (0) 9 (0)
 GH5 19 (1) 48 (25) 22 (8) 27 (9)
 GH3 16 (3) 33 (4) 16 (3) 12 (2)
 GH16 3 (1) 15 (6) 9 (2) 5 (2)
 GH8 2 (1) 4 (2) 1 (1) 1 (1)
 GH31 1 (0) 7 (0) 6 (0) 1 (0)
Total 512 (77) 646 (189) 301 (84) 283 (89)
  1. aDockerin containing transcripts are expected to participate in cellulosome complex formation and the number shown in parentheses indicates the number of transcripts that contain at least one of these domains