Table 3 CC-124H specific genomic DNA information of single polymorphisms (SNPs) and insertion/deletion (indels)
chra | Position | Type | Genic | Feature | TAIR10.gene_IDb | TAIR10.desc |
|---|---|---|---|---|---|---|
1 | 7296452 | SNP | Cre01.g052650 | CDS | AT3G01310.2 | Phosphoglycerate mutase-like family protein |
3 | 8957195 | Indel | Cre03.g208833 | CDS | AT1G35530.2 | DEAD/DEAH box RNA helicase family protein |
3 | 8972552 | Indel | Cre03.g209281 | CDS | AT1G08190.1 | Vacuolar protein sorting 41 |
3 | 3163671 | SNP | Cre03.g165215 | CDS | AT5G45900.1 | ThiF family protein |
3 | 4595120 | SNP | Cre03.g177007 | CDS | AT5G63080.1 | 2-Oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
6 | 82060 | Indel | Cre06.g249500 | CDS | AT4G14140.1 | DNA methyltransferase 2 |
6 | 262541 | Indel | Cre06.g250850 | CDS | AT3G24320.1 | MUTL protein homolog 1 |
6 | 408975 | Indel | Cre06.g252100 | CDS | AT5G58410.1 | HEAT/U-box domain-containing protein |
6 | 1502181 | Indel | Cre06.g259700 | CDS | AT3G52570.1 | Alpha/beta-Hydrolases superfamily protein |
6 | 1804583 | Indel | Cre06.g262500 | CDS | AT4G24560.1 | Ubiquitin-specific protease 16 |
6 | 2321106 | SNP | Cre06.g267250 | CDS | AT3G23610.3 | Dual specificity protein phosphatase 1 |
6 | 5727069 | SNP | Cre06.g286950 | CDS | AT3G04710.1 | Ankyrin repeat family protein |
6 | 7089219 | SNP | Cre06.g297082 | CDS | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase |
9 | 6439357 | Indel | Cre09.g407110 | CDS | AT5G19840.2 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
9 | 5152546 | SNP | Cre09.g399030 | CDS | AT1G06570.1 | phytoene desaturation 1 |
9 | 5224176 | SNP | Cre09.g399439 | CDS | AT5G19080.1 | RING/U-box superfamily protein |
9 | 7001422 | SNP | Cre09.g410950 | CDS | AT1G37130.1 | Nitrate reductase 2 |
9 | 7399225 | SNP | Creg09.g413200 | CDS | AT1G03740.1 | Protein kinase superfamily protein |
10 | 3763671 | SNP | Cre10.g446650 | CDS | AT3G27730.1 | ATP binding; ATP-dependent helicases; DNA helicases |
11 | 222386 | Indel | Cre11.g467552 | CDS | AT2G22480.1 | Phosphofructokinase 5 |