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Table 1 Definitions of MIPS FunCats and number of matched genes in the two sugar utilization stages

From: Association of improved oxidative stress tolerance and alleviation of glucose repression with superior xylose-utilization capability by a natural isolate of Saccharomyces cerevisiae

ID Functional category 7 h p value 48 h p value
1 01.01 Amino acid metabolism 108 (6.51%) 9.90e−03 88 (6.81%) 6.76e−03
2 01.02 Nitrogen, sulfur and selenium metabolism 0 7.39e−02 40 (3.09%) 4.30e−02
3 01.03 Nucleotide/nucleoside/nucleobase metabolism 139 (8.38%) 4.37e−03 118 (9.14%) 4.08e−04
4 01.04 Phosphate metabolism 0 (149) 1.00e+00 149 (11.5%) 6.56e−03
5 01.06 Lipid, fatty acid, and isoprenoid metabolism 0 (102) 1.00e+00 108 (8.36%) 1.21e−02
6 01.06.02 Membrane lipid metabolism 0 (25) 1.00e+00 33 (2.55%) 2.70e−02
7 01.06.02.01 Phospholipid metabolism 0 (22) 1.00e+00 94 (2.32%) 1.44e−02
8 01.07 Metabolism of vitamins, cofactors, and prosthetic groups 79 (4.76%) 3.78e−03 66 (5.11%) 1.66e−03
9 02.07 Pentose-phosphate pathway 0 (10) 3.19e−01 13 (1.00%) 6.71e−03
10 02.07.01 Pentose-phosphate pathway oxidative branch 0 (3) 2.20e−01 5 (0.38%) 2.42e−03
11 02.11.07 Regulation of electron transport and membrane-associated energy conservation 0 (1) 4.82e−01 2 (0.15%) 4.76e−02
12 02.16 Fermentation 0 (21) 7.78e−02 24 (1.85%) 3.21e−04
13 02.16.01 Alcohol fermentation 11 (0.66%) 5.94e−03 10 (0.77%) 3.11e−03
14 10.01.03 DNA synthesis and replication 67 (4.04%) 2.88e−02 66 (5.11%) 5.73e−05
15 10.01.05 DNA recombination and DNA repair 0 (111) 1.69e−01 106 (8.21%) 5.71e−04
16 10.01.09 DNA restriction or modification 0 (89) 1.00e+00 92 (7.12%) 9.23e−03
17 10.03 Cell cycle 269 (16.2%) 2.90e−02 241 (18.6%) 8.67e−06
18 12.01 Ribosome biogenesis 229 (13.8%) 3.28e−49 0 (53) 1.00e+00
19 12.04 Translation 160 (9.65%) 2.91e−30 0 (44) 1.00e+00
10 32.01.09 DNA damage response 0 (47) 3.97e−01 45 (3.48%) 3.78e−02
21 32.7 Detoxification 0 (50) 2.16e−01 45 (3.48%) 3.78e−02
22 34.01 Homeostasis 0 (65) 1.00e+00 69 (5.34%) 3.49e−02
23 70.19 Peroxisome 0 (9) 1.00e+00 15 (1.16%) 2.74e−02
  1. The percentage was calculated by classified genes/all the significantly changed genes
  2. 7 h, glucose utilization stage; 48 h, xylose utilization stage
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Biotechnology for Biofuels and Bioproducts

ISSN: 2731-3654

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