Table 1 Definitions of MIPS FunCats and number of matched genes in the two sugar utilization stages
ID | Functional category | 7Â h | p value | 48Â h | p value | |
|---|---|---|---|---|---|---|
1 | 01.01 | Amino acid metabolism | 108 (6.51%) | 9.90e−03 | 88 (6.81%) | 6.76e−03 |
2 | 01.02 | Nitrogen, sulfur and selenium metabolism | 0 | 7.39e−02 | 40 (3.09%) | 4.30e−02 |
3 | 01.03 | Nucleotide/nucleoside/nucleobase metabolism | 139 (8.38%) | 4.37e−03 | 118 (9.14%) | 4.08e−04 |
4 | 01.04 | Phosphate metabolism | 0 (149) | 1.00e+00 | 149 (11.5%) | 6.56e−03 |
5 | 01.06 | Lipid, fatty acid, and isoprenoid metabolism | 0 (102) | 1.00e+00 | 108 (8.36%) | 1.21e−02 |
6 | 01.06.02 | Membrane lipid metabolism | 0 (25) | 1.00e+00 | 33 (2.55%) | 2.70e−02 |
7 | 01.06.02.01 | Phospholipid metabolism | 0 (22) | 1.00e+00 | 94 (2.32%) | 1.44e−02 |
8 | 01.07 | Metabolism of vitamins, cofactors, and prosthetic groups | 79 (4.76%) | 3.78e−03 | 66 (5.11%) | 1.66e−03 |
9 | 02.07 | Pentose-phosphate pathway | 0 (10) | 3.19e−01 | 13 (1.00%) | 6.71e−03 |
10 | 02.07.01 | Pentose-phosphate pathway oxidative branch | 0 (3) | 2.20e−01 | 5 (0.38%) | 2.42e−03 |
11 | 02.11.07 | Regulation of electron transport and membrane-associated energy conservation | 0 (1) | 4.82e−01 | 2 (0.15%) | 4.76e−02 |
12 | 02.16 | Fermentation | 0 (21) | 7.78e−02 | 24 (1.85%) | 3.21e−04 |
13 | 02.16.01 | Alcohol fermentation | 11 (0.66%) | 5.94e−03 | 10 (0.77%) | 3.11e−03 |
14 | 10.01.03 | DNA synthesis and replication | 67 (4.04%) | 2.88e−02 | 66 (5.11%) | 5.73e−05 |
15 | 10.01.05 | DNA recombination and DNA repair | 0 (111) | 1.69e−01 | 106 (8.21%) | 5.71e−04 |
16 | 10.01.09 | DNA restriction or modification | 0 (89) | 1.00e+00 | 92 (7.12%) | 9.23e−03 |
17 | 10.03 | Cell cycle | 269 (16.2%) | 2.90e−02 | 241 (18.6%) | 8.67e−06 |
18 | 12.01 | Ribosome biogenesis | 229 (13.8%) | 3.28e−49 | 0 (53) | 1.00e+00 |
19 | 12.04 | Translation | 160 (9.65%) | 2.91e−30 | 0 (44) | 1.00e+00 |
10 | 32.01.09 | DNA damage response | 0 (47) | 3.97e−01 | 45 (3.48%) | 3.78e−02 |
21 | 32.7 | Detoxification | 0 (50) | 2.16e−01 | 45 (3.48%) | 3.78e−02 |
22 | 34.01 | Homeostasis | 0 (65) | 1.00e+00 | 69 (5.34%) | 3.49e−02 |
23 | 70.19 | Peroxisome | 0 (9) | 1.00e+00 | 15 (1.16%) | 2.74e−02 |