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Table 2 Alpha diversity estimates of the vinasse samples

From: Genome-resolved metagenomics of sugarcane vinasse bacteria

Sample name REAGO megaGTA metaphlan2 MG-RAST qPCR
Number of Recruited 16S rRNA genes Number of Recruited rplB genes Number of Species Number of Effective species Number of 16S rRNA copies (/1,000,000) kg dry/matter
A 13 ± 2 21 ± 2 10 ± 1 37 ± 1 25,750 ± 13,900
B 10 ± 3 16 ± 3 14 ± 1 47 ± 4 16,839 ± 11,664
C 12 ± 1 22 ± 2 13 ± 0 38 ± 1 16,281 ± 1104
D 4 ± 0 15 ± 2 5 ± 0 3 ± 0 10,749 ± 3336
E 17 ± 2 13 ± 1 10 ± 0 20 ± 1 839 ± 840
F 6 ± 2 17 ± 1 12 ± 1 29 ± 3 1135 ± 1142
  1. Diversity was quantified by the number of partial genes recruited (REAGO and megaGTA), or the estimated number of species (metaphlan2 and MG-RAST) from the vinasse metagenomes; results from real-time PCR of the 16S gene were also included. Rarified forward reads were used as input for metaphlan2, reago and megagta analysis; merged reads were used in the MGRAST analysis and these results were normalized by library size