Table 1 Genes and their transcription levels relating to metabolism of iron, oxalate, and unsaturated fatty acid, which are involved in free radical generation in I. lacteus CD2
Metabolic pattern | Gene | Putative function | FPKM | |||
|---|---|---|---|---|---|---|
Glu3d | Glu6d | LC3d | LC6d | |||
Iron transportation | ||||||
 High affinity | ||||||
  Siderophore-dependent | 0809.78 | Siderophore iron transporter | 77.7 | 32.8 | 12.7 | 47.1 |
  Reductase/ferroxidase-dependent | 0809.292 | Ferric reductase | 113 | 46.0 | 29.5 | 160 |
| Â | 0811.747 | Ferric reductase | 131 | 129 | 138 | 191 |
| Â | 0809.825 | Ferroxidase Fet3 | 131 | 5.11 | 9.88 | 3.45 |
| Â | 0809.824 | Permease Ftr1 | 158 | 8.63 | 4.10 | 4.12 |
 Low affinity | ||||||
  Reductase/permease-dependent | 0807.394 | Manganese transporter SMF2 | 17.5 | 36.7 | 17.7 | 6.32 |
| Â | 0925.691 | Manganese transporter pdt1 | 54.7 | 148 | 25.2 | 16.4 |
Iron reduction | 0811.251 | Cellobiose dehydrogenase | 5.54 | 3.81 | 42.9 | 150 |
| Â | 0810.454 | Glycopeptide | 730 | 2764 | 3695 | 3820 |
| Â | 0809.299 | 1,4-Benzoquinone reductase | 1392 | 4844 | 966 | 396 |
| Â | 0809.746 | NADH-quinone oxidoreductase | 198 | 404 | 537 | 271 |
| Â | 0808.232 | Quinate permease | 19.3 | 27.1 | 53.0 | 35.3 |
| Â | 0808.329 | Quinate permease | 1.66 | 2.37 | 91.6 | 81.5 |
| Â | 0821.194 | Quinate permease | 137 | 170 | 1218 | 3500 |
Oxalate biosynthesis | 0811.539 | Oxaloacetase | 7.83 | 207 | 103 | 77.2 |
| Â | 0807.332 | Oxaloacetase | 50.1 | 291 | 277 | 264 |
| Â | 0811.538 | Glyoxylate dehydrogenase | 5.21 | 174 | 6.35 | 7.59 |
| Â | 0810.540 | Glyoxylate dehydrogenase | 36.6 | 55.0 | 106 | 66.7 |
| Â | 0809.407 | Glyoxylate dehydrogenase | 57.6 | 66.5 | 187 | 127 |
| Â | 0807.465 | Glyoxylate dehydrogenase | 28.9 | 78.2 | 116 | 69.3 |
Oxalate degradation | 0806.66 | Oxalate oxidase | 1231 | 825 | 33.0 | 2.66 |
| Â | 0808.407 | Oxalate decarboxylase | 2.61 | 7.41 | 4.53 | 7.58 |
| Â | 0816.66 | Oxalate decarboxylase | 131 | 160 | 2.26 | 8.10 |
| Â | 1079.217 | Oxalate decarboxylase | 3.95 | 8.49 | 4.20 | 4.70 |
Unsaturated fatty acid biosynthesis | 0925.1168 | Delta(12) fatty acid desaturase | 24.5 | 14.1 | 1.15 | 1.41 |
| Â | 0925.1167 | Delta(12) fatty acid desaturase | 813 | 950 | 90.0 | 106 |
| Â | 0816.230 | Delta(9) fatty acid desaturase | 474 | 798 | 74.0 | 139 |