Table 2 Genes and their transcription levels relating to plant cell wall polysaccharides degradation under different culture conditions in I. lacteus CD2
Substrate preference | Family | Putative function | SignalP | Gene | FPKM | |||
|---|---|---|---|---|---|---|---|---|
Glu3d | Glu6d | LC3d | LC6d | |||||
Cellulose | GH3 | Beta-glucosidase | Yes | 0931.133 | 53.1 | 61.6 | 48.1 | 107 |
| Â | GH5 | Endoglucanase | Yes | 0808.758 | 5.53 | 8.30 | 24.5 | 33.5 |
| Â | Â | Â | Yes | 0816.65 | 5.53 | 5.32 | 27.0 | 74.1 |
| Â | GH6 | Cellobiohydrolase | Yes | 0824.208 | 38.6 | 31.0 | 3409 | 12,641 |
| Â | GH7 | Cellobiohydrolase | Yes | 0809.465 | 9.97 | 2.37 | 186 | 102 |
| Â | Â | Endoglucanase | Yes | 0818.184 | 4.72 | 4.38 | 15.7 | 63.4 |
| Â | GH12 | Endoglucanase | Yes | 0811.630 | 2.44 | 1.96 | 2.90 | 67.5 |
| Â | GH44 | Endoglucanase | Yes | 0811.593 | 5.89 | 6.94 | 23.1 | 132 |
| Â | GH45 | Endoglucanase | Yes | 0810.565 | 2.58 | 2.53 | 57.8 | 82.1 |
Hemicellulose | GH10 | Xylanase | Yes | 0808.183 | 1.24 | 1.70 | 48.1 | 194 |
| Â | Â | Â | Yes | 0808.184 | 0.48 | 1.97 | 2275 | 547 |
| Â | Â | Â | Yes | 0808.185 | 37.5 | 24.4 | 482 | 14.7 |
| Â | Â | Â | Yes | 0809.107 | 0.60 | 0.42 | 40.0 | 643 |
| Â | Â | Â | Yes | 0925.1205 | 6.58 | 5.08 | 12.8 | 67.7 |
| Â | GH43 | Xylosidase/arabinosidase | No | 0925.205 | 4.23 | 2.63 | 116 | 217 |
|  | GH51 | α-l-arabinofuranosidase | Yes | 0806.422 | 13.5 | 9.07 | 6.14 | 296 |
| Â | Â | Â | Yes | 0808.962 | 1.66 | 1.69 | 14.3 | 25.2 |