The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

Poudel, Suresh; Giannone, Richard J.; Basen, Mirko; Nookaew, Intawat; Poole, Farris L.; Kelly, Robert M.; Adams, Michael W. W.; Hettich, Robert L.

doi:10.1186/s13068-018-1076-1

Biotechnology for Biofuels and Bioproducts

Table 3 Differentially abundant CAZYmes in different growth conditions

From: The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

LocusTag_ProteinDescription	Comparison (subA_subB)^a	p value	subA–subB (fold change^a)	CBM
Athe_0610_glycoside hydrolase starch-binding	CB_SWG	0.00	− 4.66	Yes
Athe_0610_glycoside hydrolase starch-binding	GLU_SWG	0.00	− 3.98	Yes
Athe_0610_glycoside hydrolase starch-binding	GLU_XYLN	0.00	− 4.37	Yes
Athe_0610_glycoside hydrolase starch-binding	Simple_Complex	0.01	− 2.81	Yes
Athe_0610_glycoside hydrolase starch-binding	CB_XYLN	0.00	− 5.04	Yes
Athe_0610_glycoside hydrolase starch-binding	C6_C5	0.01	− 2.69	Yes
Athe_0460_glycoside hydrolase 94	GLU_CB	0.02	− 1.55	No
Athe_0460_glycoside hydrolase 94	XYLN_XYLO	0.00	− 2.68	No
Athe_0460_glycoside hydrolase 94	GLU_XYLN	0.00	1.41	No
Athe_0460_glycoside hydrolase 94	GLU_XYLO	0.01	− 1.27	No
Athe_0460_glycoside hydrolase 94	AVI_SWG	0.02	4.8	No
Athe_0460_glycoside hydrolase 94	AVI_XYLN	0.00	4.65	No
Athe_0460_glycoside hydrolase 94	AVI_XYLO	0.01	1.97	No
Athe_0460_glycoside hydrolase 94	AVI_CB	0.03	1.69	No
Athe_0460_glycoside hydrolase 94	CB_XYLN	0.00	2.96	No
Athe_0460_glycoside hydrolase 94	GLU_AVI	0.00	− 3.24	No
Athe_0459_glycoside hydrolase 94	AVI_SWG	0.04	4.7	No
Athe_0459_glycoside hydrolase 94	AVI_XYLN	0.04	5.96	No
Athe_0459_glycoside hydrolase 94	AVI_CB	0.01	1.54	No
Athe_0459_glycoside hydrolase 94	GLU_AVI	0.03	− 2.91	No
Athe_2028_glycoside hydrolase family 4	Simple_Complex	0.04	1.16	No
Athe_1857_glycoside hydrolase family 48	AVI_XYLN	0.03	− 1.63	Yes
Athe_1857_glycoside hydrolase family 48	AVI_XYLO	0.02	− 2.13	Yes
Athe_1857_glycoside hydrolase family 48	AVI_CB	0.03	− 2.96	Yes
Athe_1857_glycoside hydrolase family 48	Simple_Complex	0.01	1.21	Yes
Athe_1857_glycoside hydrolase family 48	GLU_AVI	0.04	1.9	Yes
Athe_0089_Endo-1,4-beta-xylanase	XYLN_XYLO	0.00	5.01	Yes
Athe_0089_Endo-1,4-beta-xylanase	GLU_XYLN	0.00	− 5.05	Yes
Athe_0089_Endo-1,4-beta-xylanase	XYLN_SWG	0.00	5.22	Yes
Athe_0089_Endo-1,4-beta-xylanase	AVI_XYLN	0.00	− 5.44	Yes
Athe_0089_Endo-1,4-beta-xylanase	CB_XYLN	0.01	− 5.02	Yes
Athe_0089_Endo-1,4-beta-xylanase	C6_C5	0.02	− 2.66	Yes
Athe_1860_glycoside hydrolase family 48	XYLN_XYLO	0.03	− 0.53	Yes
Athe_1860_glycoside hydrolase family 48	AVI_SWG	0.05	− 2.14	Yes
Athe_1860_glycoside hydrolase family 48	XYLN_SWG	0.05	− 0.72	Yes
Athe_1860_glycoside hydrolase family 48	AVI_XYLO	0.05	− 1.95	Yes
Athe_1860_glycoside hydrolase family 48	AVI_CB	0.05	− 2.89	Yes
Athe_1860_glycoside hydrolase family 48	Simple_Complex	0.03	1.02	Yes
Athe_0609_pullulanase, type I	Simple_Complex	0.00	− 2.29	Yes
Athe_0609_pullulanase, type I	C6_C5	0.03	− 1.99	Yes
Athe_0152_Acetyl xylan esterase	GLU_CB	0.03	4.11	No
Athe_0152_Acetyl xylan esterase	GLU_XYLN	0.03	4.03	No
Athe_0594_Cellulase	Simple_Complex	0.01	− 2.05	Yes
Athe_1865_glycoside hydrolase family 9	AVI_SWG	0.04	− 1.75	Yes
Athe_1865_glycoside hydrolase family 9	AVI_XYLN	0.01	− 1.8	Yes
Athe_1865_glycoside hydrolase family 9	AVI_XYLO	0.01	− 1.81	Yes
Athe_1865_glycoside hydrolase family 9	AVI_CB	0.04	− 1.89	Yes
Athe_1865_glycoside hydrolase family 9	C6_C5	0.04	− 0.91	Yes

^aThe fold changes are in log scale. If the fold change is positive (+), the protein is significantly more abundant in substrate (left side) when compared substrate (right side) in the comparison column. Similarly, if the fold change is negative (−), the protein is significantly more abundant in substrate (right side) when compared substrate (left side) in the comparison column

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