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Table 2 Transcription factor involved in transcriptional memory

From: Transcriptional and physiological data reveal the dehydration memory behavior in switchgrass (Panicum virgatum L.)

Gene_id TF family C1 D1 D2 DMG types
AP2-EREBP 8     
 Pavir.Fb00952 AP2-EREBP 0.42 6.18 16.17 [+/+]
 Pavir.Gb00956 AP2-EREBP 6.83 15.62 37.58 [+/+]
 Pavir.J10163 AP2-EREBP 5.20 11.52 80.43 [+/+]
 Pavir.Ab02556 AP2-EREBP 8.72 18.11 4.74 [+/−]
 Pavir.Ia02224 AP2-EREBP 2.74 13.82 1.69 [+/−]
 Pavir.Ia04894 AP2-EREBP 4.02 89.68 18.92 [+/−]
 Pavir.J08480 AP2-EREBP 8.18 3.87 13.29 [−/+]
 Pavir.Aa00834 AP2-EREBP 6.17 1.88 0.39 [−/−]
bHLH 6     
 Pavir.J21912 bHLH 5.68 20.24 1.57 [+/−]
 Pavir.J10667 bHLH 26.29 12.35 80.85 [−/+]
 Pavir.J25904 bHLH 13.71 3.52 8.45 [−/+]
 Pavir.Ga02255 bHLH 40.01 16.46 2.57 [−/−]
 Pavir.J12143 bHLH 19.24 5.30 1.27 [−/−]
 Pavir.J15676 bHLH 8.75 3.21 0.83 [−/−]
MYB/MYB-related 6     
 Pavir.Ea02339 MYB 18.01 40.56 0.03 [+/−]
 Pavir.Eb02679 MYB 3.60 17.13 0.06 [+/−]
 Pavir.J33046 MYB 17.65 35.32 1.17 [+/−]
 Pavir.J14839 MYB 28.25 14.11 5.20 [−/−]
 Pavir.Ea01343 MYB-related 8.63 3.54 1.25 [−/−]
 Pavir.Ea02123 MYB-related 9.62 3.87 1.40 [−/−]
WRKY 6     
 Pavir.Bb02088 WRKY 13.42 48.05 23.10 [+/−]
 Pavir.Da00323 WRKY 7.21 60.54 0.66 [+/−]
 Pavir.Ea02282 WRKY 1.48 6.56 0.18 [+/−]
 Pavir.Ea02619 WRKY 4.71 11.20 1.45 [+/−]
 Pavir.Ea03280 WRKY 7.13 62.42 1.56 [+/−]
 Pavir.J27870 WRKY 25.10 94.49 40.58 [+/−]
NAC 5     
 Pavir.J16651 NAC 5.75 21.75 171.04 [+/+]
 Pavir.Db00028 NAC 5.04 59.89 0.79 [+/−]
 Pavir.J01198 NAC 6.03 34.41 1.49 [+/−]
 Pavir.J04751 NAC 0.28 4.48 0.08 [+/−]
 Pavir.Ea03233 NAC 29.55 12.72 2.55 [−/−]
C2H2 4     
 Pavir.Ia00292 C2H2 0.29 9.29 24.41 [+/+]
 Pavir.J00894 C2H2 0.47 26.09 53.69 [+/+]
 Pavir.Ia00353 C2H2 5.92 56.11 25.94 [+/−]
 Pavir.J25179 C2H2 13.54 91.23 34.93 [+/−]
C3H 3     
 Pavir.J04795 C3H 2.76 8.68 27.18 [+/+]
 Pavir.J29640 C3H 31.45 186.91 75.98 [+/−]
 Pavir.Ea00362 C3H 8.09 2.14 15.60 [−/+]
Others 8     
 Pavir.J32718 ARF 7.44 1.93 8.21 [−/+]
 Pavir.Ab00132 bZIP 9.16 4.45 0.97 [−/−]
 Pavir.Ab03246 C2C2-GATA 9.99 28.48 10.59 [+/−]
 Pavir.J02359 G2-like 2.20 4.54 1.01 [+/−]
 Pavir.J10950 GRAS 5.86 18.52 5.34 [+/−]
 Pavir.Aa02860 HSF 4.49 23.11 61.69 [+/+]
 Pavir.J01728 OFP 14.99 6.63 3.07 [−/−]
 Pavir.Ba02147 Tify 241.62 115.85 29.98 [−/−]
Numbers of four types of DMGs
 [+/+] 8 (17.4%)     
 [−/−] 11 (23.9%)     
 [+/−] 22 (47.8%)     
 [−/+] 5 (10.9%)     
 Total 46     
  1. C control, D1–2 first and second dehydration stresses, R1 first recovery period, “+”, “−” and “=” denote up-regulated genes, down-regulated genes, and genes with no significant changes in expression, respectively