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Table 2 Transcription factor involved in transcriptional memory

From: Transcriptional and physiological data reveal the dehydration memory behavior in switchgrass (Panicum virgatum L.)

Gene_id

TF family

C1

D1

D2

DMG types

AP2-EREBP

8

    

 Pavir.Fb00952

AP2-EREBP

0.42

6.18

16.17

[+/+]

 Pavir.Gb00956

AP2-EREBP

6.83

15.62

37.58

[+/+]

 Pavir.J10163

AP2-EREBP

5.20

11.52

80.43

[+/+]

 Pavir.Ab02556

AP2-EREBP

8.72

18.11

4.74

[+/−]

 Pavir.Ia02224

AP2-EREBP

2.74

13.82

1.69

[+/−]

 Pavir.Ia04894

AP2-EREBP

4.02

89.68

18.92

[+/−]

 Pavir.J08480

AP2-EREBP

8.18

3.87

13.29

[−/+]

 Pavir.Aa00834

AP2-EREBP

6.17

1.88

0.39

[−/−]

bHLH

6

    

 Pavir.J21912

bHLH

5.68

20.24

1.57

[+/−]

 Pavir.J10667

bHLH

26.29

12.35

80.85

[−/+]

 Pavir.J25904

bHLH

13.71

3.52

8.45

[−/+]

 Pavir.Ga02255

bHLH

40.01

16.46

2.57

[−/−]

 Pavir.J12143

bHLH

19.24

5.30

1.27

[−/−]

 Pavir.J15676

bHLH

8.75

3.21

0.83

[−/−]

MYB/MYB-related

6

    

 Pavir.Ea02339

MYB

18.01

40.56

0.03

[+/−]

 Pavir.Eb02679

MYB

3.60

17.13

0.06

[+/−]

 Pavir.J33046

MYB

17.65

35.32

1.17

[+/−]

 Pavir.J14839

MYB

28.25

14.11

5.20

[−/−]

 Pavir.Ea01343

MYB-related

8.63

3.54

1.25

[−/−]

 Pavir.Ea02123

MYB-related

9.62

3.87

1.40

[−/−]

WRKY

6

    

 Pavir.Bb02088

WRKY

13.42

48.05

23.10

[+/−]

 Pavir.Da00323

WRKY

7.21

60.54

0.66

[+/−]

 Pavir.Ea02282

WRKY

1.48

6.56

0.18

[+/−]

 Pavir.Ea02619

WRKY

4.71

11.20

1.45

[+/−]

 Pavir.Ea03280

WRKY

7.13

62.42

1.56

[+/−]

 Pavir.J27870

WRKY

25.10

94.49

40.58

[+/−]

NAC

5

    

 Pavir.J16651

NAC

5.75

21.75

171.04

[+/+]

 Pavir.Db00028

NAC

5.04

59.89

0.79

[+/−]

 Pavir.J01198

NAC

6.03

34.41

1.49

[+/−]

 Pavir.J04751

NAC

0.28

4.48

0.08

[+/−]

 Pavir.Ea03233

NAC

29.55

12.72

2.55

[−/−]

C2H2

4

    

 Pavir.Ia00292

C2H2

0.29

9.29

24.41

[+/+]

 Pavir.J00894

C2H2

0.47

26.09

53.69

[+/+]

 Pavir.Ia00353

C2H2

5.92

56.11

25.94

[+/−]

 Pavir.J25179

C2H2

13.54

91.23

34.93

[+/−]

C3H

3

    

 Pavir.J04795

C3H

2.76

8.68

27.18

[+/+]

 Pavir.J29640

C3H

31.45

186.91

75.98

[+/−]

 Pavir.Ea00362

C3H

8.09

2.14

15.60

[−/+]

Others

8

    

 Pavir.J32718

ARF

7.44

1.93

8.21

[−/+]

 Pavir.Ab00132

bZIP

9.16

4.45

0.97

[−/−]

 Pavir.Ab03246

C2C2-GATA

9.99

28.48

10.59

[+/−]

 Pavir.J02359

G2-like

2.20

4.54

1.01

[+/−]

 Pavir.J10950

GRAS

5.86

18.52

5.34

[+/−]

 Pavir.Aa02860

HSF

4.49

23.11

61.69

[+/+]

 Pavir.J01728

OFP

14.99

6.63

3.07

[−/−]

 Pavir.Ba02147

Tify

241.62

115.85

29.98

[−/−]

Numbers of four types of DMGs

 [+/+]

8 (17.4%)

    

 [−/−]

11 (23.9%)

    

 [+/−]

22 (47.8%)

    

 [−/+]

5 (10.9%)

    

 Total

46

    
  1. C control, D1–2 first and second dehydration stresses, R1 first recovery period, “+”, “−” and “=” denote up-regulated genes, down-regulated genes, and genes with no significant changes in expression, respectively