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Table 2 Codon usage analysis of xylA and xylB orthologs from different sources

From: Metabolic engineering of Corynebacterium glutamicum for efficient production of succinate from lignocellulosic hydrolysate

Gene Source Gene symbol Protein size (kDa) Codon usage
Rarely used codons Very rarely used codons
xylA E. coli b3565 47.5 7 1
P. polymyxa PPSC2_c4572 52.2 7 2
S. coelicolor SCO1169 41.8 23 0
X. campestris XC_2477 49.2 5 0
xylB E. coli b3564 52.3 29 2
P. polymyxa PPSC2_c4571 54.8 17 2
S. coelicolor SCO1170 51.9 26 0
X. campestris XC_2478 54.8 5 0
  1. ‘Very rarely used codons’ and ‘Rarely used codons’ indicate codons represented at less than 10% or 20% in the codon usage table of C. glutamicum (http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=196627&aa=1&style=N)