Table 3 SNPs in Z. mobilis 8b by comparing with new Z. mobilis ZM4 genome sequence
Start and end position | Location in coding or no-encoding region | Description of SNP (changes from ZM4 to 8b) |
|---|---|---|
95726–95726 | ZMO0109 | C to T (C150C) |
131578–131578 | ZMO0143 | C to T (L55F) |
508460–508460 | ZMO0505 (rluC) | G to A (G165G) |
511672–511672 | ZMO0510 (pdhC) | G to A (G81S) |
512937–512937 | ZMO0511 | G to A (V63I) |
519279–519279 | ZMO0516 | G to A (V142I) |
529169–529169 | ZMO0533 (rpsE) | G to A (S198N) |
529994–529994 | ZMO0536 (rplO) | G to A (V128I) |
532460–532460 | ZMO0538 (adk) | G to A (G217D) |
537400–537400 | ZMO0543 (acnA) | G to A (G433D) |
569817–569817 | ZMO0566 | G to A (P13S) |
625382–625382 | Promoter of ZMO0629 (fliC) | C to T |
630791–630791 | ZMO0636 | C to T (P42S) |
643884–643884 | ZMO0653 | A to G (I148I) |
658560–658560 | ZMO0663 (radC) | G to A (L174L) |
674692–674692 | ZMO0680 | G to A (P276P) |
691579–691579 | ZMO0692 (gyrA) | G to A (N220N) |
698481–698481 | Promoter of ZMOt012 | G to A |
716406–716406 | ZMO0715 (aspS) | C to T (L544L) |
743017–743017 | ZMO0743 (prfC) | C to T (T136I) |
846559–846559 | ZMO0840 | G to A (R350R) |
849934–849934 | ZMO0842 (dgtP) | G to A (G366D) |
905206–905206 | ZMO0893 | C to T (A14T) |
916878–916878 | ZMO0904 (bga) | C to T (G760D) |
950749–950749 | ZMO0927 (aat) | G to A (L125L) |
995001–995001 | ZMO0976 | Insertion one “A,” and frame-shift and shorten ZMO0976 from 1023 to 708 bp (in both 2032 and 8b) |
1019918–1019918 | Promoter of ZMO1001 | C to T |
1044279–1044279 | ZMO1025 (nrdD) | C to T (T509I) |
1051161–1051161 | ZMO1036 (argG) | C to T (L46F) |
1079284–1079284 | ZMO1064 | C to T (L11F) |
1130189–1130189 | ZMO1113 (ndh) | G to A (V239I) |
1159680–1159680 | ZMO1139 (ilvI) | C to T (S524F) |
1176064–1176064 | ZMO1156 (rpsB) | C to T (R97H) |
1179870–1179870 | ZMO1162 | C to T (A94 V) |
1250454–1250454 | Promoter of ZMO1223 (fabD) and ZMO1225 (rpsF) | C to T |
1262326–1262326 | ZMO1236 (adhA) | C to T (A153T) |
1263377–1263378 | Promoter of ZMO1236 (adhA) and downstream of ZMO1237 (ldhA) | Missing one base “C” |
1263983–1269992 | ZMO1237 (ldhA) | 11 bp (CATGGGTCATA) deletion and 6010 bp Pgap-xylA xylB yiaB yiaA wecH tetA inserted into ZMO1237 3′-end, with ZMO1237 shorten from 996 to 498 bp |
1270007–1270007 | ZMO1237 (ldhA) | G to A (in both 2032 and 8b) |
1330074–1330074 | ZMO1307 (fumA) | C to T (T69I) |
1363705–1363705 | ZMO1341 | C to T (G248D) |
1367432–1367432 | ZMO1345 (pepN) | C to T (A493T) |
1397162–1397162 | ZMO1377 | G to A (P447S) |
1412666–1412666 | ZMO1390 | G to A (L243F) |
1417484–1417484 | ZMO1395 (hutG) | G to A (A257V) |
1430724–1430724 | ZMO1409 (cbbF) | G to A (G220G) |
1442443–1442443 | ZMO1422 | G to A (I400I) |
1447932–1447932 | ZMO1424 (clpB) | G to A (V374I) |
1461618–1461618 | ZMO1435 (leuS) | G to A (H13Y) |
1488113–1488113 | ZMO1461 | G to A (L174F) |
1498927–1498927 | ZMO1470 | G to A (A277V) |
1499416–1499416 | ZMO1470 | G to A (P114L) |
1509299–1509299 | ZMO1479 (etfA) | G to A (A48V) |
1519583–1519583 | ZMO1485 | C to T (D284D) |
1542900–1542900 | ZMO1511 | G to A (R130K) |
1572765–1572765 | ZMO1535 | C to T (S9F) |
1585059–1585059 | ZMO1544 (cobS) | C to T (A263T) |
1639561–1639561 | ZMO1592 (alr) | A to G (Y92Y) |
1698229–1698229 | ZMO1646 | G to A (E364 K) |
1713092–1713092 | ZMO1657 | G to A (K176K) |
1715028–1715028 | ZMO1659 (ftsH) | G to A (V68I) |
1739226–1739226 | ZMO1685 (serA) | A to G (T93A) |
1890021–1890021 | ZMO1842 (nosX) | C to T (G277D) |
1894604–1894604 | ZMO1848 | C to T (K347K) |
1917360–1917360 | ZMO1862 | C to T (A33T) |
1945390–1945390 | ZMO1886 | C to T (V343I) |
1999937–1999937 | ZMO1934 | C to T (E50K) (in both 2032 and 8b) |
2018321–2018321 | ZMO1955 (yqkJ) | G to A (S388F) |