Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating β-proteobacterium Pandoraea sp. ISTKB

Kumar, Madan; Verma, Sandhya; Gazara, Rajesh Kumar; Kumar, Manish; Pandey, Ashok; Verma, Praveen Kumar; Thakur, Indu Shekhar

doi:10.1186/s13068-018-1148-2

Biotechnology for Biofuels and Bioproducts

Table 3 Differentially expressed antioxidant and stress response proteins on kraft lignin

From: Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating β-proteobacterium Pandoraea sp. ISTKB

Uniprot IDs	Locus tag	Name	Log2 fold change	Unique peptides	Sequence coverage (%)	Mol. weight (kDa)	Intensity
		Glutathione enzymes
A0A1E3LF33	A9762_23395	Glutathione ABC transporter substrate-binding protein	1.80871	29	77.1	57.261	0
A0A1E3LKY8	A9762_17040	Glutathione S-transferase	1.18746	8	41.1	24.027	3.57E−36
A0A1E3LF68	A9762_25435	Glutathione S-transferase	0.61286	8	65.2	22.821	1.27E−72
A0A1E3LBR6	A9762_09395	Glutathione S-transferase	0.55477	4	25.7	24.666	5.23E−14
A0A1E3LQD9	A9762_10375	Glutathione S-transferase	0.51263	5	37.8	27.794	1.84E−17
A0A1E3LFJ0	A9762_24585	Glutathione-disulfide reductase	0.35879	22	63.6	48.837	7.37E−222
A0A1E3LI91	A9762_18915	Glutathione S-transferase	0.05437	5	39	25.252	2.31E − 26
A0A1E3LP56	A9762_00695	Glutathione S-transferase	− 0.96784	8	53.6	23.768	4.31E−48
A0A1E3LI39	A9762_18265	Glutathione S-transferase	− 1.44982	18	82.3	23.728	3.01E−285
A0A1E3LAC5	A9762_09365	Glutathione S-transferase	− 1.70035	15	72.6	26.078	1.22E−149
A0A1E3LPY3	A9762_02245	Glutathione synthetase	− 1.79520	21	82.4	34.566	2.19E−195
A0A1E3LL68	A9762_15125	Glutathione S-transferase	− 1.85572	4	21	23.996	5.81E−18
A0A1E3LI75	A9762_04000	Lactoylglutathione lyase	− 1.97244	4	64.5	14.032	1.22E−30
A0A1E3LBC2	A9762_08325	Hydroxyacylglutathione hydrolase	− 1.98082	10	57.5	29.087	5.85E−75
A0A1E3LC63	A9762_26475	Glutathione peroxidase	1.59171	9	82.6	18.506	1.18E−57
A0A1E3LN82	A9762_11030	Glutathione peroxidase	− 1.47148	10	55.2	19.852	3.04E−128
A0A1E3LL32	A9762_17770	S-(Hydroxymethyl)glutathione dehydrogenase	− 1.97881	22	83.7	39.609	5.20E−235
A0A1E3LCG8	A9762_26430	S-Formylglutathione hydrolase	− 1.5565	9	49.6	31.49	2.83E−45
		Catalases
A0A1E3LJG2	A9762_17205	Catalase	− 1.90503	31	69.7	55.065	0
A0A1E3LHV5	A9762_19890	Catalase	1.96803	20	58.3	54.314	2.70E−159
A0A1E3LL41	A9762_15065	Catalase	1.96803	20	58.3	54.314	2.70E−159
		Superoxide dismutase
A0A1E3LHJ2	A9762_20590	Superoxide dismutase	− 1.97424	2	12.2	22.201	8.04E−07
A0A1E3LJK7	A9762_16420	Superoxide dismutase	− 1.6319	16	93.2	21.3	0
		Thioredoxin
A0A1E3LA95	A9762_09775	Thioredoxin	1.50102	6	68.5	11.693	1.86E−50
A0A1E3LIM9	A9762_21500	Thioredoxin	0.26594	13	64	30.297	2.12E−120
A0A1E3LMC9	A9762_12720	Probable thiol peroxidase	− 1.29118	15	95.8	17.552	1.19E−229
A0A1E3LK52	A9762_19935	Thioredoxin reductase	− 0.42918	12	71.1	33.796	6.61E−169
		Peroxiredoxin
A0A1E3LFM2	A9762_22670	Peroxiredoxin	0.06241	4	27.7	19.976	2.59E−09
A0A1E3LG33	A9762_25080	Peroxiredoxin	− 0.7565	5	51.9	17.411	3.34E−34
A0A1E3LIX5	A9762_17525	Peroxiredoxin	1.63617	11	84.5	20.829	4.52E−87
A0A1E3LNW8	A9762_00130	Peroxiredoxin	− 1.41372	5	35	14.926	1.51E−22
		Glyoxylase
A0A1E3LJS5	A9762_02855	Glyoxalase	1.90407	4	26.4	24.933	1.26E−10
A0A1E3LML8	A9762_12845	Glyoxalase	− 1.55877	4	40.7	15.609	4.05E−12
		Glutaredoxin
A0A1E3LF15	A9762_23485	Glutaredoxin	− 0.65795	4	51.9	11.612	1.33E−69
A0A1E3LQ32	A9762_02205	Glutaredoxin 3	1.02376	8	79.1	9.8904	4.95E−60
		Alkylperoxide reductase
A0A1E3LAL5	A9762_08705	Alkyl hydroperoxide reductase	− 1.92917	10	79.1	16.924	2.59E−121
A0A1E3LDK0	A9762_25350	Alkyl hydroperoxide reductase AhpD	1.76395	5	40.7	22.242	5.04E−30
A0A1E3LCA5	A9762_26215	Alkyl hydroperoxide reductase AhpD	− 1.58398	5	49.5	19.7	1.06E−56
A0A1E3LGT9	A9762_04630	Alkyl hydroperoxide reductase AhpD	− 0.87073	6	67.7	14.207	2.45E−17
A0A1E3LKG5	A9762_16100	Alkyl hydroperoxide reductase AhpD	− 1.52586	9	64.9	21.888	2.68E−61
A0A1E3LLQ8	A9762_13730	Alkyl hydroperoxide reductase AhpD	− 0.29909	10	77.7	18.588	4.23E−101
A0A1E3LLX0	A9762_13735	Alkyl hydroperoxide reductase	− 0.30453	16	85.7	20.001	0

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