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Table 4 Differentially expressed reductase, dehydrogenase, transferase, and hydratase proteins on kraft lignin

From: Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating β-proteobacterium Pandoraea sp. ISTKB

Uniprot IDs Locus tag Name Log2 fold change Unique peptides Sequence coverage (%) Mol. weight (kDa) Intensity
   Reductases      
A0A1E3LM36 A9762_03695 Aldo/keto reductase − 1.446536 54 95.1 38.448 0
A0A1E3LPJ8 A9762_01385 Aldo/keto reductase − 1.811371 8 43.3 37.797 1.87E−50
A0A1E3LS07 A9762_01040 Aldo/keto reductase 0.040585 20 73.6 30.685 1.63E−183
A0A1E3LG16 A9762_22220 Glyoxylate/hydroxypyruvate reductase A 1.99991 14 69.4 33.941 4.47E−124
A0A1E3LQJ8 A9762_00050 Bifunctional glyoxylate/hydroxypyruvate reductase B − 0.601011 20 82.2 34.525 1.34E−204
A0A1E3LI17 A9762_19295 Alkene reductase − 0.075801 28 92 40.61 0
A0A1E3LIA9 A9762_18295 2-Alkenal reductase 0.117504 12 46.4 42.805 2.10E−74
A0A1E3LDX7 A9762_24675 Ferredoxin–NADP(+) reductase 1.250238 18 77 29.272 3.54E−106
A0A1E3LFT3 A9762_21855 NADPH-dependent FMN reductase − 0.973988 9 69.1 19.818 1.98E−77
A0A1E3LAB2 A9762_08440 NADPH:quinone reductase − 1.850827 14 71.9 36.075 3.86E−109
A0A1E3LQJ8 A9762_00050 Hydroxypyruvate reductase B − 0.601011 20 82.2 34.525 1.34E−204
A0A1E3LLZ7 A9762_13130 Fumarate reductase 1.805886 2 7.4 52.225 7.89E−05
   Dehydrogenases      
A0A1E3LDJ7 A9762_25850 Formate dehydrogenase subunit beta 1.664541 6 23.2 34.213 1.25E−22
A0A1E3LDC4 A9762_25845 Formate dehydrogenase-N subunit alpha 1.414862 16 34.2 90.668 3.91E−102
A0A1E3LDS6 A9762_24610 Formate dehydrogenase 0.761355 2 57.1 8.7799 3.84E−22
A0A1E3LE53 A9762_24625 Formate dehydrogenase 1.257519 9 30 56.957 3.45E−62
A0A1E3LG97; A0A1E3LF08 A9762_24620 Formate dehydrogenase subunit alpha 1.020855 21 34 104.98 1.29E−121
A0A1E3LL63 A9762_15395 NADH dehydrogenase 0.064345 9 60.8 21.897 5.70E−49
A0A1E3LPJ3 A9762_01450 Aldehyde dehydrogenase 1.745055 17 54.5 52.735 1.72E−105
A0A1E3LJ61 A9762_20360 Acyl-CoA dehydrogenase 0.210716 11 46.1 43.33 1.22E−90
A0A1E3LH50 A9762_22885 Alcohol dehydrogenase 0.448181 14 55.4 40.556 1.68E−67
A0A1E3LGE7 A9762_21150 Aldehyde dehydrogenase 0.513856 4 14.4 51.073 1.64E−12
A0A1E3LFY2 A9762_21880 NAD(FAD)-utilizing dehydrogenase 1.806462 3 12.9 42.366 7.90E−09
A0A1E3LF76 A9762_23430 Acyl-CoA dehydrogenase 0.067218 9 31.6 40.901 1.33E−56
A0A1E3LKN0 A9762_15340 Acyl-CoA dehydrogenase − 1.0527852 7 24.4 41.792 1.04E−41
A0A1E3LP12 A9762_00210 Acyl-CoA dehydrogenase − 0.467758 37 72.4 65.029 0
A0A1E3LKM0 A9762_16035 NAD(P)H dehydrogenase (quinone) − 1.786348 11 55.7 22.107 2.74E−162
A0A1E3LKB6 A9762_03215 Alcohol dehydrogenase − 1.58185 16 63.3 44.426 1.36E−99
A0A1E3LJV2 A9762_02775 Putative NADH dehydrogenase − 0.256436 15 86.3 21.594 1.71E−184
A0A1E3LIB8 A9762_18460 Short-chain dehydrogenase − 1.862879 2 13.3 26.395 8.23E−08
A0A1E3LI49 A9762_22120 Short-chain dehydrogenase − 1.335172 6 29.3 24.127 2.78E−23
A0A1E3LI38 A9762_22070 Short-chain dehydrogenase − 1.826239 3 15.2 29.599 1.04E−17
A0A1E3LHQ0 A9762_20005 Dehydrogenase − 0.022626 13 53.6 38.384 2.57E−91
A0A1E3LHP2 A9762_20015 Aldehyde dehydrogenase − 0.39059 15 63.3 51.925 2.00E−131
A0A1E3LHJ3 A9762_19710 Short-chain dehydrogenase − 0.299807 5 32.7 26.91 1.68E−19
A0A1E3LLS1 A9762_17065 Short-chain dehydrogenase − 1.1228889 10 50.4 29.165 2.51E−85
A0A1E3LFZ7 A9762_24160 Acyl-CoA dehydrogenase − 1.977129 8 13.2 90.723 3.27E−24
A0A1E3LFV1 A9762_21935 Alcohol dehydrogenase − 0.223075 15 71.1 36.536 2.10E−159
A0A1E3LF72 A9762_23085 NADPH:quinone dehydrogenase − 1.970038 12 66.5 34.703 2.88E−132
A0A1E3LE86 A9762_05015 Short-chain dehydrogenase − 0.122157 19 90.8 26.28 1.25E−173
A0A1E3LE78 A9762_24110 Short-chain dehydrogenase − 1.0213605 8 59.1 24.582 6.63E−39
A0A1E3LE10 A9762_24765 Aldehyde dehydrogenase − 0.713344 26 69.6 50.552 2.84E−236
A0A1E3LDF9 A9762_25465 Short-chain dehydrogenase − 1.0369092 18 82.1 26.766 0
A0A1E3LCV6 A9762_26070 Acyl-CoA dehydrogenase − 0.559374 33 78.2 63.6 0
A0A1E3LCK3 A9762_26745 Aldehyde dehydrogenase − 1.998458 41 82.4 55.098 0
A0A1E3LCD2 A9762_09370 Acyl-CoA dehydrogenase − 0.349182 10 31.9 45.179 6.63E−43
   Transferase and hydratase      
A0A1E3LDE2 A9762_25255 Acetyltransferase 1.1424203 5 42.2 19.294 9.45E−19
A0A1E3LEG1 A9762_24350 Acyl-CoA transferase − 1.894681 5 23.8 49.528 1.44E−09
A0A1E3LE25 A9762_26525 Acyltransferase − 0.658173 11 53.7 31.029 2.25E−127
A0A1E3LCY1 A9762_06345 CoA transferase − 1.644591 5 19.7 43.746 5.43E−17
A0A1E3LAQ8 A9762_09850 Formyl-CoA transferase 1.63564 16 57 43.01 7.70E−140
A0A1E3LEY2 A9762_23230 Formyl-CoA:oxalate CoA transferase 1.480644 23 65.9 45.431 4.87E−142
A0A1E3LF20 A9762_25975 N-Hydroxyarylamine O-acetyltransferase − 0.812216 13 68.8 31.71 1.16E−71
A0A1E3LB74 A9762_08395 Enoyl-CoA hydratase 0.844962 4 17.4 30.92 1.3832E−11
A0A1E3LG06 A9762_22140 Enoyl-CoA hydratase − 0.845624 7 39.9 28.125 5.7526E−122
A0A1E3LD66 A9762_27340 Enoyl-CoA hydratase 1.887871 9 53.1 29.49 1.5759E−26
A0A1E3LNX6 A9762_00200 Acetyl-CoA acetyltransferase − 0.329002 26 92.5 41.664 0
A0A1E3LED2 A9762_24145 Acetyl-CoA acetyltransferase − 0.647329 11 34.2 46.667 5.8563E−44
A0A1E3LFL9 A9762_22115 Acetyl-CoA acetyltransferase − 1.992637 21 75.9 40.895 0
A0A1E3LLK2 A9762_13635 Acetyl-CoA acetyltransferase − 1.672549 24 85 40.687 0
A0A1E3LLN7 A9762_13660 Acetyl-CoA acetyltransferase − 1.969308 20 70.5 41.273 0
A0A1E3LFA3 A9762_23740 Enoyl-CoA hydratase − 1.935441 19 86.8 28.063 8.927E−161
A0A1E3LNG2 A9762_11320 Enoyl-CoA hydratase 0.497127 6 36.4 27.805 7.4808E−33
A0A1E3LNH0 A9762_11445 Enoyl-CoA hydratase − 1.83413 8 45.4 29.067 2.3968E−55
A0A1E3LNY9 A9762_00195 Enoyl-CoA hydratase − 0.4152 17 84.7 27.622 1.6359E−146