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Table 4 Differentially expressed reductase, dehydrogenase, transferase, and hydratase proteins on kraft lignin

From: Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating β-proteobacterium Pandoraea sp. ISTKB

Uniprot IDs

Locus tag

Name

Log2 fold change

Unique peptides

Sequence coverage (%)

Mol. weight (kDa)

Intensity

  

Reductases

     

A0A1E3LM36

A9762_03695

Aldo/keto reductase

− 1.446536

54

95.1

38.448

0

A0A1E3LPJ8

A9762_01385

Aldo/keto reductase

− 1.811371

8

43.3

37.797

1.87E−50

A0A1E3LS07

A9762_01040

Aldo/keto reductase

0.040585

20

73.6

30.685

1.63E−183

A0A1E3LG16

A9762_22220

Glyoxylate/hydroxypyruvate reductase A

1.99991

14

69.4

33.941

4.47E−124

A0A1E3LQJ8

A9762_00050

Bifunctional glyoxylate/hydroxypyruvate reductase B

− 0.601011

20

82.2

34.525

1.34E−204

A0A1E3LI17

A9762_19295

Alkene reductase

− 0.075801

28

92

40.61

0

A0A1E3LIA9

A9762_18295

2-Alkenal reductase

0.117504

12

46.4

42.805

2.10E−74

A0A1E3LDX7

A9762_24675

Ferredoxin–NADP(+) reductase

1.250238

18

77

29.272

3.54E−106

A0A1E3LFT3

A9762_21855

NADPH-dependent FMN reductase

− 0.973988

9

69.1

19.818

1.98E−77

A0A1E3LAB2

A9762_08440

NADPH:quinone reductase

− 1.850827

14

71.9

36.075

3.86E−109

A0A1E3LQJ8

A9762_00050

Hydroxypyruvate reductase B

− 0.601011

20

82.2

34.525

1.34E−204

A0A1E3LLZ7

A9762_13130

Fumarate reductase

1.805886

2

7.4

52.225

7.89E−05

  

Dehydrogenases

     

A0A1E3LDJ7

A9762_25850

Formate dehydrogenase subunit beta

1.664541

6

23.2

34.213

1.25E−22

A0A1E3LDC4

A9762_25845

Formate dehydrogenase-N subunit alpha

1.414862

16

34.2

90.668

3.91E−102

A0A1E3LDS6

A9762_24610

Formate dehydrogenase

0.761355

2

57.1

8.7799

3.84E−22

A0A1E3LE53

A9762_24625

Formate dehydrogenase

1.257519

9

30

56.957

3.45E−62

A0A1E3LG97; A0A1E3LF08

A9762_24620

Formate dehydrogenase subunit alpha

1.020855

21

34

104.98

1.29E−121

A0A1E3LL63

A9762_15395

NADH dehydrogenase

0.064345

9

60.8

21.897

5.70E−49

A0A1E3LPJ3

A9762_01450

Aldehyde dehydrogenase

1.745055

17

54.5

52.735

1.72E−105

A0A1E3LJ61

A9762_20360

Acyl-CoA dehydrogenase

0.210716

11

46.1

43.33

1.22E−90

A0A1E3LH50

A9762_22885

Alcohol dehydrogenase

0.448181

14

55.4

40.556

1.68E−67

A0A1E3LGE7

A9762_21150

Aldehyde dehydrogenase

0.513856

4

14.4

51.073

1.64E−12

A0A1E3LFY2

A9762_21880

NAD(FAD)-utilizing dehydrogenase

1.806462

3

12.9

42.366

7.90E−09

A0A1E3LF76

A9762_23430

Acyl-CoA dehydrogenase

0.067218

9

31.6

40.901

1.33E−56

A0A1E3LKN0

A9762_15340

Acyl-CoA dehydrogenase

− 1.0527852

7

24.4

41.792

1.04E−41

A0A1E3LP12

A9762_00210

Acyl-CoA dehydrogenase

− 0.467758

37

72.4

65.029

0

A0A1E3LKM0

A9762_16035

NAD(P)H dehydrogenase (quinone)

− 1.786348

11

55.7

22.107

2.74E−162

A0A1E3LKB6

A9762_03215

Alcohol dehydrogenase

− 1.58185

16

63.3

44.426

1.36E−99

A0A1E3LJV2

A9762_02775

Putative NADH dehydrogenase

− 0.256436

15

86.3

21.594

1.71E−184

A0A1E3LIB8

A9762_18460

Short-chain dehydrogenase

− 1.862879

2

13.3

26.395

8.23E−08

A0A1E3LI49

A9762_22120

Short-chain dehydrogenase

− 1.335172

6

29.3

24.127

2.78E−23

A0A1E3LI38

A9762_22070

Short-chain dehydrogenase

− 1.826239

3

15.2

29.599

1.04E−17

A0A1E3LHQ0

A9762_20005

Dehydrogenase

− 0.022626

13

53.6

38.384

2.57E−91

A0A1E3LHP2

A9762_20015

Aldehyde dehydrogenase

− 0.39059

15

63.3

51.925

2.00E−131

A0A1E3LHJ3

A9762_19710

Short-chain dehydrogenase

− 0.299807

5

32.7

26.91

1.68E−19

A0A1E3LLS1

A9762_17065

Short-chain dehydrogenase

− 1.1228889

10

50.4

29.165

2.51E−85

A0A1E3LFZ7

A9762_24160

Acyl-CoA dehydrogenase

− 1.977129

8

13.2

90.723

3.27E−24

A0A1E3LFV1

A9762_21935

Alcohol dehydrogenase

− 0.223075

15

71.1

36.536

2.10E−159

A0A1E3LF72

A9762_23085

NADPH:quinone dehydrogenase

− 1.970038

12

66.5

34.703

2.88E−132

A0A1E3LE86

A9762_05015

Short-chain dehydrogenase

− 0.122157

19

90.8

26.28

1.25E−173

A0A1E3LE78

A9762_24110

Short-chain dehydrogenase

− 1.0213605

8

59.1

24.582

6.63E−39

A0A1E3LE10

A9762_24765

Aldehyde dehydrogenase

− 0.713344

26

69.6

50.552

2.84E−236

A0A1E3LDF9

A9762_25465

Short-chain dehydrogenase

− 1.0369092

18

82.1

26.766

0

A0A1E3LCV6

A9762_26070

Acyl-CoA dehydrogenase

− 0.559374

33

78.2

63.6

0

A0A1E3LCK3

A9762_26745

Aldehyde dehydrogenase

− 1.998458

41

82.4

55.098

0

A0A1E3LCD2

A9762_09370

Acyl-CoA dehydrogenase

− 0.349182

10

31.9

45.179

6.63E−43

  

Transferase and hydratase

     

A0A1E3LDE2

A9762_25255

Acetyltransferase

1.1424203

5

42.2

19.294

9.45E−19

A0A1E3LEG1

A9762_24350

Acyl-CoA transferase

− 1.894681

5

23.8

49.528

1.44E−09

A0A1E3LE25

A9762_26525

Acyltransferase

− 0.658173

11

53.7

31.029

2.25E−127

A0A1E3LCY1

A9762_06345

CoA transferase

− 1.644591

5

19.7

43.746

5.43E−17

A0A1E3LAQ8

A9762_09850

Formyl-CoA transferase

1.63564

16

57

43.01

7.70E−140

A0A1E3LEY2

A9762_23230

Formyl-CoA:oxalate CoA transferase

1.480644

23

65.9

45.431

4.87E−142

A0A1E3LF20

A9762_25975

N-Hydroxyarylamine O-acetyltransferase

− 0.812216

13

68.8

31.71

1.16E−71

A0A1E3LB74

A9762_08395

Enoyl-CoA hydratase

0.844962

4

17.4

30.92

1.3832E−11

A0A1E3LG06

A9762_22140

Enoyl-CoA hydratase

− 0.845624

7

39.9

28.125

5.7526E−122

A0A1E3LD66

A9762_27340

Enoyl-CoA hydratase

1.887871

9

53.1

29.49

1.5759E−26

A0A1E3LNX6

A9762_00200

Acetyl-CoA acetyltransferase

− 0.329002

26

92.5

41.664

0

A0A1E3LED2

A9762_24145

Acetyl-CoA acetyltransferase

− 0.647329

11

34.2

46.667

5.8563E−44

A0A1E3LFL9

A9762_22115

Acetyl-CoA acetyltransferase

− 1.992637

21

75.9

40.895

0

A0A1E3LLK2

A9762_13635

Acetyl-CoA acetyltransferase

− 1.672549

24

85

40.687

0

A0A1E3LLN7

A9762_13660

Acetyl-CoA acetyltransferase

− 1.969308

20

70.5

41.273

0

A0A1E3LFA3

A9762_23740

Enoyl-CoA hydratase

− 1.935441

19

86.8

28.063

8.927E−161

A0A1E3LNG2

A9762_11320

Enoyl-CoA hydratase

0.497127

6

36.4

27.805

7.4808E−33

A0A1E3LNH0

A9762_11445

Enoyl-CoA hydratase

− 1.83413

8

45.4

29.067

2.3968E−55

A0A1E3LNY9

A9762_00195

Enoyl-CoA hydratase

− 0.4152

17

84.7

27.622

1.6359E−146