From: Advances in metabolic modeling of oleaginous microalgae
Organism | Metabolic model (ID) | Analysis | Genes | Reactions | Metabolites | Compartments | Citations [references] |
---|---|---|---|---|---|---|---|
Chlamydomonas reinhardtii | GSM | – | 1069 | – | – | – | 143 [19] |
Chlamydomonas reinhardtii | GSM | – | – | 1500 | 1200 | – | 53 [20] |
Chlamydomonas reinhardtii | GSM | FBA | – | 484 | 458 | 3 | 292 [23] |
Chlamydomonas reinhardtii | GSM | FBA | – | 259 | – | 10 | 82 [24] |
Chlamydomonas reinhardtii | GSM (AlgaGEM) | FBA | 2249 | 1725 | 1862 | 4 | 96 [25] |
Chlamydomonas reinhardtii | GSM (iRC1080) | FBA | 1080 | 2190 | 1068 | 10 | 231 [26] |
Chlamydomonas reinhardtii | CM | FBA | – | 280 | 278 | – | 47 [27] |
Chlamydomonas reinhardtii | GSM | FBA | – | 160 | 164 | 2 | 100 [28] |
Chlamydomonas reinhardtii | GSM | FBA | – | 280 | 278 | 0 | 12 [29]a |
Chlamydomonas reinhardtii | GSM (iBD1106) | FBA | 1106 | 2445 | 1959 | 10 | 10 [30]b |
Chlamydomonas reinhardtii | GSM (iCre1355) | FBA | 1355 | 2394 | 1133 | 10 | 12 [21] |
Chlamydomonas reinhardtii | GSM | FBA/13C MFA | – | 139 | – | 3 | 2 [22] |
Chlorella protothecoides | CM | 13C MFA | – | 24 | 19 | 0 | 83 [34] |
Chlorella protothecoides | GSM | FBA/13C MFA | 461 | 272 | – | 4 | 0 [31] |
Chlorella pyrenoidosa | CM | MFA | – | 67 | – | 0 | 258 [35] |
Chlorella sp. | CM | dFBA | – | 114 | 161 | – | 31 [79] |
Chlorella variabilis | GSM (iAJ526) | FBA | 526 | 1455 | 1236 | 5 | 10 [91] |
Chlorella vulgaris UTEX 395 | GSM (iCZ843) | FBA | 843 | 2294 | 1770 | 6 | 14 [32] |
Chlorella vulgaris UTEX 396 | GSM (iCZ946) | dFBA | 946 | 2294 | 1770 | 6 | 2 [33]c |
Nannochloropsis gaditana | GSM (iRJ1321) | FBA | 1321 | 1918 | 1862 | 4 | 1 [38] |
Nannochloropsis salina | GSM (iNS934) | dFBA | 934 | 2345 | – | 10 | 4 [37] |
Nannochloropsis sp. | GSM | FBA | 383 | 987 | 1024 | 6 | 0 [36] |
Ostreococcus lucimarinus | GSM | FBA | – | 964 | 1100 | 2 | 38 [49] |
Ostreococcus tauri | GSM | FBA | – | 871 | 1014 | 2 | 38 [49] |
Phaeodactylum tricornutum | GSM | – | 151 | 88 | – | 5 | 289 [51] |
Phaeodactylum tricornutum | GSM | FBA | – | – | – | 2 | 12 [52] |
Phaeodactylum tricornutum | GSM | FBA | 607 | 849 | 587 | 6 | 27 [53] |
Phaeodactylum tricornutum | GSM (iLB1027) | FBA | 1027 | 4456 | 2172 | 6 | 24 [54] |
Synechococcus elongatus PCC7942 | GSM (iJB785) | FBA | 785 | 850 | 768 | 7 | 13 [78] |
Synechococcus sp. PCC 7002 | GSM (iSyp611) | FBA | 611 | 552 | 542 | 2 | 39 [92] |
Synechococcus sp. PCC 7002 | GSM (iSyp708) | FBA | 708 | 646 | 581 | 2 | 39 [93] |
Synechococcus sp. PCC 7002 | GSM (iSyp821) | FBA | 821 | 792 | 777 | 3 | 3 [94] |
Synechococcus sp. PCC 7002 | GSM (iSyp728) | FBA | 728 | 742 | 696 | 7 | 22 [95] |
Synechocystis sp. PCC 6803 | CM |  13C MFA | – | 29 | – | – | 181 [96] |
Synechocystis sp. PCC 6803 | CM | FBA | – | 70 | 46 | 2 | 165 [39] |
Synechocystis sp. PCC 6803 | CM | FBA | – | 43 | – | – | 43 [40] |
Synechocystis sp. PCC 6803 | GSM | FBA | – | 380 | 291 | 6 | 159 [41] |
Synechocystis sp. PCC 6803 | GSM | FBA | 669 | 882 | 790 | 2 | 113 [44] |
Synechocystis sp. PCC 6803 | GSM (iSyn811) | FBA | 811 | 956 | 911 | 2 | 59 [43] |
Synechocystis sp. PCC 6803 | GSM | FBA/13C MFA | – | 493 | 465 | 2 | 51 [42] |
Synechocystis sp. PCC 6803 | GSM (iJN678) | FBA | 678 | 863 | 795 | 3 | 206 [46] |
Synechocystis sp. PCC 6803 | GSM | FBA | 677 | 759 | 601 | 6 | 143 [45] |
Tetraselmis sp. | GSM | FBA | 2249 | 1725 | 1862 | 4 | 2 [47]d |
Tisochrysis lutea | CM | EM | – | 157 | 162 | 2 | 2 [50] |