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Table 2 Differential expression of key genes related to NADPH and acetyl-CoA

From: Transcriptome and gene expression analysis of docosahexaenoic acid producer Schizochytrium sp. under different oxygen supply conditions

Pathway Enzyme Gene ID RPKM Up/downregulated
Normal High-oxygen
EMP HK SchizochytriumA2194 182.23 623.48 3.42 ↑
PFK SchizochytriumA2542 181.29 510.14 2.81 ↑
FBA SchizochytriumA3279 912.09 6566.81 7.20 ↑
PK SchizochytriumA5008 360.54 1144.91 3.18 ↑
SchizochytriumA0923 86.38 73.29 1.18 ↓
SchizochytriumA4432 73.81 53.34 1.38 ↓
PPP G6PD SchizochytriumA4008 219.6 418.4 1.91 ↑
6PGD SchizochytriumA3341 553.18 778.82 1.41 ↑
RPE SchizochytriumA1080 81.89 86.24 1.05 ↑
RPIA SchizochytriumA0514 43.28 99.67 2.30 ↑
TCA CS SchizochytriumA5632 483.05 825.88 1.71 ↑
IDH SchizochytriumA8242 280.02 282.25 1.00 ↑
KGDC SchizochytriumA6065 7.6 4.7 1.62 ↓
SchizochytriumA6274 387.51 349.09 1.11 ↓
SchizochytriumA8288 249.99 237.49 1.05 ↓
ME SchizochytriumA9142 799.4 907.84 1.14 ↑
ACL SchizochytriumA2237 63.24 67.27 1.06 ↑
Peroxisome SOD SchizochytriumA5508 123.65 61.05 2.03 ↓
SchizochytriumA4372 622.26 500.95 1.24 ↓
SchizochytriumA0375 1102.97 1083.19 1.02 ↓
CAT SchizochytriumA4694 45.8 70.63 1.54 ↑
APX SchizochytriumA2136 700.57 395.35 1.77 ↓
  1. RPKM The percentage of a gene covered by reads. The RPKM method is able to eliminate the influence of different gene length and sequencing discrepancy on the calculation of gene expression. Therefore, the calculated gene expression can be directly used for comparing the difference of gene expression among samples. Numbers of up/down-regulated means RPKMhigh oxygen supply/RPKMnormal oxygen supply. *The up arrow indicated that gene was upregulated under high oxygen supply condition. The down arrow indicted that gene was down-regulated under high oxygen supply condition