TY - JOUR AU - Samson, R. A. AU - Yilmaz, N. AU - Houbraken, J. AU - Spierenburg, H. AU - Seifert, K. A. AU - Peterson, S. W. AU - Varga, J. AU - Frisvad, J. C. PY - 2001 DA - 2001// TI - Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium JO - Stud Mycol VL - 70 UR - https://doi.org/10.3114/sim.2011.70.04 DO - 10.3114/sim.2011.70.04 ID - Samson2001 ER - TY - JOUR AU - Xian, L. AU - Wang, F. AU - Luo, X. AU - Feng, Y. L. AU - Feng, J. X. PY - 2015 DA - 2015// TI - Purification and characterization of a highly efficient calcium-independent α-Amylase from Talaromyces pinophilus 1-95 JO - PLoS ONE VL - 10 UR - https://doi.org/10.1371/journal.pone.0121531 DO - 10.1371/journal.pone.0121531 ID - Xian2015 ER - TY - JOUR AU - Li, C. X. AU - Zhao, S. AU - Zhang, T. AU - Xian, L. AU - Liao, L. S. AU - Liu, J. L. AU - Feng, J. X. PY - 2017 DA - 2017// TI - Genome sequencing and analysis of Talaromyces pinophilus provide insights into biotechnological applications JO - Sci Rep. VL - 7 UR - https://doi.org/10.1038/s41598-017-00567-0 DO - 10.1038/s41598-017-00567-0 ID - Li2017 ER - TY - JOUR AU - Marín-Navarro, J. AU - Polaina, J. PY - 2011 DA - 2011// TI - Glucoamylases: structural and biotechnological aspects JO - Appl Microbiol Biotechnol VL - 89 UR - https://doi.org/10.1007/s00253-010-3034-0 DO - 10.1007/s00253-010-3034-0 ID - Marín-Navarro2011 ER - TY - JOUR AU - Wang, J. P. AU - Quirk, A. AU - Lipkowski, J. AU - Dutcher, J. R. AU - Clarke, A. J. PY - 2013 DA - 2013// TI - Direct in situ observation of synergism between cellulolytic enzymes during the biodegradation of crystalline cellulose fibers JO - Langmuir VL - 29 UR - https://doi.org/10.1021/la403401c DO - 10.1021/la403401c ID - Wang2013 ER - TY - JOUR AU - Li, Z. H. AU - Yao, G. S. AU - Wu, R. M. AU - Gao, L. W. AU - Kan, Q. B. AU - Liu, M. AU - Yang, P. AU - Liu, G. D. AU - Qin, Y. Q. AU - Song, X. AU - Zhong, Y. H. AU - Fang, X. AU - Qu, Y. B. PY - 2015 DA - 2015// TI - Synergistic and dose-controlled regulation of cellulase gene expression in Penicillium oxalicum JO - PLoS Genet VL - 11 UR - https://doi.org/10.1371/journal.pgen.1005509 DO - 10.1371/journal.pgen.1005509 ID - Li2015 ER - TY - JOUR AU - VanKuyk, P. A. AU - Benen, J. A. E. AU - Wösten, H. A. B. AU - Visser, J. AU - Vries, R. P. PY - 2012 DA - 2012// TI - A broader role for AmyR in Aspergillus niger: regulation of the utilisation of d-glucose or d-galactose containing oligo- and polysaccharides JO - Appl Microbiol Biotechnol VL - 93 UR - https://doi.org/10.1007/s00253-011-3550-6 DO - 10.1007/s00253-011-3550-6 ID - VanKuyk2012 ER - TY - JOUR AU - Xiong, Y. R. AU - Zhao, S. AU - Fu, L. H. AU - Liao, X. Z. AU - Li, C. X. AU - Yan, Y. S. AU - Liao, L. S. AU - Feng, J. X. PY - 2018 DA - 2018// TI - Characterization of novel roles of a HMG-box protein PoxHmbB in biomass-degrading enzyme production by Penicillium oxalicum JO - Appl Microbiol Biotechnol VL - 102 UR - https://doi.org/10.1007/s00253-018-8867-y DO - 10.1007/s00253-018-8867-y ID - Xiong2018 ER - TY - JOUR AU - Ichinose, S. AU - Tanaka, M. AU - Shintani, T. AU - Gomi, K. PY - 2018 DA - 2018// TI - Increased production of biomass-degrading enzymes by double deletion of creA and creB genes involved in carbon catabolite repression in Aspergillus oryzae JO - J Biosci Bioeng VL - 125 UR - https://doi.org/10.1016/j.jbiosc.2017.08.019 DO - 10.1016/j.jbiosc.2017.08.019 ID - Ichinose2018 ER - TY - JOUR AU - Emery, P. AU - Durand, B. AU - Mach, B. AU - Reith, W. PY - 1996 DA - 1996// TI - RFX proteins, a novel family of DNA binding proteins conserved in the eukaryotic kingdom JO - Nucleic Acids Res VL - 24 UR - https://doi.org/10.1093/nar/24.5.803 DO - 10.1093/nar/24.5.803 ID - Emery1996 ER - TY - JOUR AU - Gajiwala, K. S. AU - Chen, H. AU - Cornille, F. AU - Roques, B. P. AU - Reith, W. AU - Mach, B. AU - Burley, S. K. PY - 2000 DA - 2000// TI - Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding JO - Nature VL - 403 UR - https://doi.org/10.1038/35002634 DO - 10.1038/35002634 ID - Gajiwala2000 ER - TY - JOUR AU - Bugeja, H. E. AU - Hynes, M. J. AU - Andrianopoulos, A. PY - 2010 DA - 2010// TI - The RFX protein RfxA is an essential regulator of growth and morphogenesis in Penicillium marneffei JO - Eukaryot Cell VL - 9 UR - https://doi.org/10.1128/EC.00226-09 DO - 10.1128/EC.00226-09 ID - Bugeja2010 ER - TY - JOUR AU - Domínguez-Santos, R. AU - Martín, J. F. AU - Kosalková, K. AU - Prieto, C. AU - Ullán, R. V. AU - García-Estrada, C. PY - 2012 DA - 2012// TI - The regulatory factor PcRFX1 controls the expression of the three genes of β-lactam biosynthesis in Penicillium chrysogenum JO - Fungal Genet Biol VL - 49 UR - https://doi.org/10.1016/j.fgb.2012.08.002 DO - 10.1016/j.fgb.2012.08.002 ID - Domínguez-Santos2012 ER - TY - JOUR AU - Aftab, S. AU - Semenec, L. AU - Chu, J. S. C. AU - Chen, N. S. PY - 2008 DA - 2008// TI - Identification and characterization of novel human tissue-specific RFX transcription factors JO - BMC Evol Biol VL - 8 UR - https://doi.org/10.1186/1471-2148-8-226 DO - 10.1186/1471-2148-8-226 ID - Aftab2008 ER - TY - JOUR AU - Wu, S. Y. AU - McLeod, M. PY - 1995 DA - 1995// TI - The sak1+ gene of Schizosaccharomyces pombe encodes an RFX family DNA-binding protein that positively regulates cyclic AMP-dependent protein kinase-mediated exit from the mitotic cell cycle JO - Mol Cell Biol VL - 15 UR - https://doi.org/10.1128/MCB.15.3.1479 DO - 10.1128/MCB.15.3.1479 ID - Wu1995 ER - TY - JOUR AU - Schmitt, E. K. AU - Kuck, U. PY - 2000 DA - 2000// TI - The fungal CPCR1 protein, which binds specifically to β-lactam biosynthesis genes, is related to human regulatory factor X transcription factors JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.275.13.9348 DO - 10.1074/jbc.275.13.9348 ID - Schmitt2000 ER - TY - JOUR AU - Zhang, T. AU - Zhao, S. AU - Liao, L. S. AU - Li, C. X. AU - Liao, G. Y. AU - Feng, J. X. PY - 2017 DA - 2017// TI - Deletion of TpKu70 facilitates gene targeting in Talaromyces pinophilus and identification of TpAmyR involvement in amylase production JO - World J Microbiol Biotechnol VL - 33 UR - https://doi.org/10.1007/s11274-017-2331-5 DO - 10.1007/s11274-017-2331-5 ID - Zhang2017 ER - TY - JOUR AU - Zaim, J. AU - Speina, E. AU - Kierzek, A. M. PY - 2005 DA - 2005// TI - Identification of new gene regulated by the Crt1 transcription factor, an effector of the DNA damage checkpoint pathway in Saccharomyces cerevisiae JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M404669200 DO - 10.1074/jbc.M404669200 ID - Zaim2005 ER - TY - JOUR AU - Wang, B. AU - Cai, P. L. AU - Sun, W. L. AU - Li, J. G. AU - Tian, C. G. AU - Ma, Y. H. PY - 2015 DA - 2015// TI - A transcriptomic analysis of Neurospora crassa using five major crop residues and the novel role of the sporulation regulator rca-1 in lignocellulase production JO - Biotechnol Biofuels VL - 8 UR - https://doi.org/10.1186/s13068-014-0179-6 DO - 10.1186/s13068-014-0179-6 ID - Wang2015 ER - TY - JOUR AU - Yan, Y. S. AU - Zhao, S. AU - Liao, L. S. AU - He, Q. P. AU - Xiong, Y. R. AU - Wang, L. AU - Li, C. X. AU - Feng, J. X. PY - 2017 DA - 2017// TI - Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum JO - Biotechnol Biofuels VL - 10 UR - https://doi.org/10.1186/s13068-017-0966-y DO - 10.1186/s13068-017-0966-y ID - Yan2017 ER - TY - JOUR AU - Schmitt, E. K. AU - Bunse, A. AU - Janus, D. AU - Hoff, B. AU - Friedlin, E. AU - Kürnsteiner, H. AU - Kück, U. PY - 2004 DA - 2004// TI - Winged helix transcription factor CPCR1 is involved in regulation of beta-lactam biosynthesis in the fungus Acremonium chrysogenum JO - Eukaryot Cell VL - 3 UR - https://doi.org/10.1128/EC.3.1.121-134.2004 DO - 10.1128/EC.3.1.121-134.2004 ID - Schmitt2004 ER - TY - JOUR AU - Hu, Y. B. AU - Liu, G. D. AU - Li, Z. H. AU - Qin, Y. Q. AU - Qu, Y. B. AU - Song, X. PY - 2013 DA - 2013// TI - G protein-cAMP signaling pathway mediated by PGA3 plays different roles in regulating the expressions of amylases and cellulases in Penicillium decumbens JO - Fungal Genet Biol VL - 58–59 UR - https://doi.org/10.1016/j.fgb.2013.08.002 DO - 10.1016/j.fgb.2013.08.002 ID - Hu2013 ER - TY - JOUR AU - Zhang, H. AU - Wang, S. AU - Zhang, X. X. AU - Ji, W. AU - Song, F. P. AU - Zhao, Y. AU - Li, J. PY - 2016 DA - 2016// TI - The amyR-deletion strain of Aspergillus niger CICC2462 is a suitable host strain to express secreted protein with a low background JO - Microbiol Cell Fact. VL - 15 UR - https://doi.org/10.1186/s12934-016-0463-1 DO - 10.1186/s12934-016-0463-1 ID - Zhang2016 ER - TY - JOUR AU - Huang, M. AU - Zhou, Z. AU - Elledge, S. J. PY - 1998 DA - 1998// TI - The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor JO - Cell VL - 94 UR - https://doi.org/10.1016/S0092-8674(00)81601-3 DO - 10.1016/S0092-8674(00)81601-3 ID - Huang1998 ER - TY - JOUR AU - Li, B. AU - Reese, J. C. PY - 2001 DA - 2001// TI - Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence JO - J Biol Chem VL - 276 UR - https://doi.org/10.1074/jbc.M104220200 DO - 10.1074/jbc.M104220200 ID - Li2001 ER - TY - JOUR AU - Sharma, V. M. AU - Li, B. AU - Reese, J. C. PY - 2003 DA - 2003// TI - SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery JO - Genes Dev VL - 17 UR - https://doi.org/10.1101/gad.1039503 DO - 10.1101/gad.1039503 ID - Sharma2003 ER - TY - JOUR AU - Ghosh, S. AU - Push, B. F. PY - 2011 DA - 2011// TI - Sequential recruitment of SAGA and TFIID in a genomic response to DNA damage in Saccharomyces cerevisiae JO - Mol Cell Biol VL - 31 UR - https://doi.org/10.1128/MCB.00317-10 DO - 10.1128/MCB.00317-10 ID - Ghosh2011 ER - TY - JOUR AU - Zhang, H. AU - Reese, J. C. PY - 2007 DA - 2007// TI - Exposing the core promoter is sufficient to activate transcription and alter coactivator requirement at RNR3 JO - Proc Natl Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0701666104 DO - 10.1073/pnas.0701666104 ID - Zhang2007 ER - TY - JOUR AU - Xin, Q. AU - Gong, Y. J. AU - Lv, X. X. AU - Chen, G. J. AU - Liu, W. F. PY - 2013 DA - 2013// TI - Trichoderma reesei histone acetyltransferase Gcn5 regulates fungal growth, conidiation, and cellulase gene expression JO - Curr Microbiol VL - 67 UR - https://doi.org/10.1007/s00284-013-0396-4 DO - 10.1007/s00284-013-0396-4 ID - Xin2013 ER - TY - JOUR AU - Zheng, F. L. AU - Gao, Y. L. AU - Lv, X. X. AU - Wang, L. AU - Li, C. Y. AU - Zhang, W. X. AU - Chen, G. J. AU - Liu, W. F. PY - 2017 DA - 2017// TI - A copper-responsive promoter replacement system to investigate gene functions in Trichoderma reesei: a case study in characterizing SAGA genes JO - Appl Microbiol Biotechnol VL - 101 UR - https://doi.org/10.1007/s00253-016-8036-0 DO - 10.1007/s00253-016-8036-0 ID - Zheng2017 ER - TY - JOUR AU - Zhang, X. J. AU - Qu, Y. B. AU - Qin, Y. Q. PY - 2016 DA - 2016// TI - Expression and chromatin structures of cellulolytic enzyme gene regulated by heterochromatin protein 1 JO - Biotechnol Biofuels VL - 9 UR - https://doi.org/10.1186/s13068-016-0624-9 DO - 10.1186/s13068-016-0624-9 ID - Zhang2016 ER - TY - JOUR AU - Portnoy, T. AU - Margeot, A. AU - Linke, R. AU - Atanasova, L. AU - Fekete, E. AU - Sándor, E. AU - Hartl, L. AU - Karaffa, L. AU - Druzhinina, I. S. AU - Seiboth, B. AU - Crom, S. AU - Kubicek, C. P. PY - 2011 DA - 2011// TI - The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation JO - BMC Genomics. VL - 12 UR - https://doi.org/10.1186/1471-2164-12-269 DO - 10.1186/1471-2164-12-269 ID - Portnoy2011 ER - TY - JOUR AU - Zhao, S. AU - Yan, Y. S. AU - He, Q. P. AU - Yang, L. AU - Yin, X. AU - Li, C. X. AU - Mao, L. C. AU - Liao, L. S. AU - Huang, J. Q. AU - Xie, S. B. AU - Nong, Q. D. AU - Zhang, Z. AU - Jing, L. AU - Xiong, Y. R. AU - Duan, C. J. AU - Liu, J. L. AU - Feng, J. X. PY - 2016 DA - 2016// TI - Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression JO - Biotechnol Biofuels VL - 9 UR - https://doi.org/10.1186/s13068-016-0616-9 DO - 10.1186/s13068-016-0616-9 ID - Zhao2016 ER - TY - JOUR AU - Miller, G. L. PY - 1959 DA - 1959// TI - Use of dinitrosalicylic acid reagent for determination of reducing sugar JO - Anal Chem VL - 31 UR - https://doi.org/10.1021/ac60147a030 DO - 10.1021/ac60147a030 ID - Miller1959 ER - TY - JOUR AU - Lichius, A. AU - Bidard, F. AU - Buchholz, F. AU - Crom, S. L. AU - Martin, J. AU - Schackwitz, W. AU - Austerlitz, T. AU - Grigoriev, I. V. AU - Baker, S. E. AU - Margeot, A. AU - Seiboth, B. AU - Kubicek, C. P. PY - 2015 DA - 2015// TI - Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype JO - BMC Genomics VL - 16 UR - https://doi.org/10.1186/s12864-015-1526-0 DO - 10.1186/s12864-015-1526-0 ID - Lichius2015 ER - TY - JOUR AU - Kumar, S. AU - Stecher, G. AU - Tamura, K. PY - 2016 DA - 2016// TI - MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets JO - Mol Biol Evol VL - 33 UR - https://doi.org/10.1093/molbev/msw054 DO - 10.1093/molbev/msw054 ID - Kumar2016 ER -