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TableĀ 2 Analysis of differentially expressed genes with xylose metabolism and product synthesis

From: Improved xylose tolerance and 2,3-butanediol production of Klebsiella pneumoniae by directed evolution of rpoD and the mechanisms revealed by transcriptomics

Gene ID KO ID Description in KEGG FPKM
kpG_48 kpC_48 Ratio
CL59.Contig3_All K00123 Formate dehydrogenase, alpha subunit 50.73 143.07 2.82
CL85.Contig1_All K01623 Fructose-bisphosphate aldolase, class I 7.35 1.74 0.24
CL85.Contig2_All K00875 d-Ribulokinase 15.05 38.19 2.54
Unigene1035_All K00324 NAD(P) transhydrogenase subunit alpha 149.96 338.43 2.26
Unigene1076_All K02112 F-type H+-transporting ATPase subunit beta 100.49 23.72 0.24
Unigene1083_All K00163 Pyruvate dehydrogenase E1 component 113.86 538.51 4.73
Unigene1153_All K01895 Acetyl-CoA synthetase 11.22 31.42 2.80
Unigene1155_All K00540 [EC:1.-.-.-] 10.48 22.74 2.17
Unigene1156_All K00134 Glyceraldehyde 3-phosphate dehydrogenase 32.59 7.15 0.22
Unigene120_All K00016 l-Lactate dehydrogenase 9.72 21.24 2.19
Unigene1301_All K00164 2-Oxoglutarate dehydrogenase E1 component 303.59 135.99 0.45
Unigene1302_All K04072 Acetaldehyde dehydrogenase/alcohol dehydrogenase 259.56 138.23 0.53
Unigene1333_All K00027 Malate dehydrogenase (oxaloacetate-decarboxylating) 423.22 79.07 0.19
Unigene1423_All K01708 Galactarate dehydratase 3.32 11.53 3.47
Unigene1482_All K02160 Acetyl-CoA carboxylase biotin carboxyl carrier protein 1.14 26.21 22.99
Unigene1622_All K01610 Phosphoenolpyruvate carboxykinase (ATP) 45.82 322.59 7.04
Unigene1654_All K01630 2-Dehydro-3-deoxyglucarate aldolase 8.13 41.7 5.13
Unigene1791_All K00128 Aldehyde dehydrogenase (NAD+) 91.44 56.81 0.62
Unigene1824_All K01679 Fumarate hydratase, class II 26.79 8.34 0.31
Unigene2070_All K03621 Glycerol-3-phosphate acyltransferase PlsX 59.66 129.23 2.17
Unigene2154_All K00344 NADPH2:quinone reductase 4.79 9.76 2.04
Unigene2315_All K01198 Xylan 1,4-beta-xylosidase 44.25 192.47 4.35
Unigene2317_All K01961 Acetyl-CoA carboxylase, biotin carboxylase subunit 29.16 75.82 2.60
Unigene2351_All K00615 Transketolase 11.25 30.88 2.74
Unigene2391_All K00134 Glyceraldehyde 3-phosphate dehydrogenase 3.81 14.3 3.75
Unigene24_All K03885 NADH dehydrogenase 24.75 70.73 2.86
Unigene2609_All K00244 Fumarate reductase flavoprotein subunit 1.89 15.72 8.32
Unigene29_All K10545 d-Xylose transport system ATP-binding protein 70.37 400.25 5.69
Unigene35_All K00322 NAD(P) transhydrogenase 39.52 144.16 3.65
Unigene531_All K00029 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) 52.42 21.1 0.40
Unigene533_All K00121 S-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase 78.74 187.57 2.38
Unigene569_All K01007 Pyruvate, water dikinase 109.29 22.1 0.20
Unigene65_All K00937 Polyphosphate kinase 10.13 25.14 2.48
Unigene6_All K00121 S-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase 2057.89 80.87 0.04
Unigene792_All K00239 Succinate dehydrogenase flavoprotein subunit 20.08 67.09 3.34
Unigene820_All K01676 Fumarate hydratase, class I 7.64 22.80 2.98
Unigene835_All K13953 Alcohol dehydrogenase, propanol-preferring 91.24 27.82 0.30
Unigene886_All K00626 Acetyl-CoA C-acetyltransferase 5.87 23.72 4.04
  1. The values given in italics and bold italics represent the upregulated and downregulated, respectively