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Table 2 Analysis of differentially expressed genes with xylose metabolism and product synthesis

From: Improved xylose tolerance and 2,3-butanediol production of Klebsiella pneumoniae by directed evolution of rpoD and the mechanisms revealed by transcriptomics

Gene ID

KO ID

Description in KEGG

FPKM

kpG_48

kpC_48

Ratio

CL59.Contig3_All

K00123

Formate dehydrogenase, alpha subunit

50.73

143.07

2.82

CL85.Contig1_All

K01623

Fructose-bisphosphate aldolase, class I

7.35

1.74

0.24

CL85.Contig2_All

K00875

d-Ribulokinase

15.05

38.19

2.54

Unigene1035_All

K00324

NAD(P) transhydrogenase subunit alpha

149.96

338.43

2.26

Unigene1076_All

K02112

F-type H+-transporting ATPase subunit beta

100.49

23.72

0.24

Unigene1083_All

K00163

Pyruvate dehydrogenase E1 component

113.86

538.51

4.73

Unigene1153_All

K01895

Acetyl-CoA synthetase

11.22

31.42

2.80

Unigene1155_All

K00540

[EC:1.-.-.-]

10.48

22.74

2.17

Unigene1156_All

K00134

Glyceraldehyde 3-phosphate dehydrogenase

32.59

7.15

0.22

Unigene120_All

K00016

l-Lactate dehydrogenase

9.72

21.24

2.19

Unigene1301_All

K00164

2-Oxoglutarate dehydrogenase E1 component

303.59

135.99

0.45

Unigene1302_All

K04072

Acetaldehyde dehydrogenase/alcohol dehydrogenase

259.56

138.23

0.53

Unigene1333_All

K00027

Malate dehydrogenase (oxaloacetate-decarboxylating)

423.22

79.07

0.19

Unigene1423_All

K01708

Galactarate dehydratase

3.32

11.53

3.47

Unigene1482_All

K02160

Acetyl-CoA carboxylase biotin carboxyl carrier protein

1.14

26.21

22.99

Unigene1622_All

K01610

Phosphoenolpyruvate carboxykinase (ATP)

45.82

322.59

7.04

Unigene1654_All

K01630

2-Dehydro-3-deoxyglucarate aldolase

8.13

41.7

5.13

Unigene1791_All

K00128

Aldehyde dehydrogenase (NAD+)

91.44

56.81

0.62

Unigene1824_All

K01679

Fumarate hydratase, class II

26.79

8.34

0.31

Unigene2070_All

K03621

Glycerol-3-phosphate acyltransferase PlsX

59.66

129.23

2.17

Unigene2154_All

K00344

NADPH2:quinone reductase

4.79

9.76

2.04

Unigene2315_All

K01198

Xylan 1,4-beta-xylosidase

44.25

192.47

4.35

Unigene2317_All

K01961

Acetyl-CoA carboxylase, biotin carboxylase subunit

29.16

75.82

2.60

Unigene2351_All

K00615

Transketolase

11.25

30.88

2.74

Unigene2391_All

K00134

Glyceraldehyde 3-phosphate dehydrogenase

3.81

14.3

3.75

Unigene24_All

K03885

NADH dehydrogenase

24.75

70.73

2.86

Unigene2609_All

K00244

Fumarate reductase flavoprotein subunit

1.89

15.72

8.32

Unigene29_All

K10545

d-Xylose transport system ATP-binding protein

70.37

400.25

5.69

Unigene35_All

K00322

NAD(P) transhydrogenase

39.52

144.16

3.65

Unigene531_All

K00029

Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)

52.42

21.1

0.40

Unigene533_All

K00121

S-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase

78.74

187.57

2.38

Unigene569_All

K01007

Pyruvate, water dikinase

109.29

22.1

0.20

Unigene65_All

K00937

Polyphosphate kinase

10.13

25.14

2.48

Unigene6_All

K00121

S-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase

2057.89

80.87

0.04

Unigene792_All

K00239

Succinate dehydrogenase flavoprotein subunit

20.08

67.09

3.34

Unigene820_All

K01676

Fumarate hydratase, class I

7.64

22.80

2.98

Unigene835_All

K13953

Alcohol dehydrogenase, propanol-preferring

91.24

27.82

0.30

Unigene886_All

K00626

Acetyl-CoA C-acetyltransferase

5.87

23.72

4.04

  1. The values given in italics and bold italics represent the upregulated and downregulated, respectively