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Table 4 Strains and plasmids used in this study

From: Improved xylose tolerance and 2,3-butanediol production of Klebsiella pneumoniae by directed evolution of rpoD and the mechanisms revealed by transcriptomics

Strains or plasmids

Relevant properties

Reference or source

Strains

 E. coli DH5α

supE44 ΔlacU169 (ϕ 80 lacZΔM15) hsdR17 recAl endAl gyrA96 thi-1 relA

TaKaRa

 E. coliS17-1λpir

TpR SmR recA thi-1 pro hsdR-M+RP4:2-Tc:Mu: Km Tn7 λpir

[50]

 kpG

Klebsiella pneumonia CICC 10781

[51]

 kpC

kpG directed evolution

This study

 kp-araB

kpG containing plasmid pUC18k- araB

This study

 kp-tktA

kpG containing plasmid pUC18k-tktA

This study

 kp-pntA

kpG containing plasmid pUC18k-pntA

This study

 kp-gapA

kpG containing plasmid pUC18k-gapA

This study

 kp-nuoF

kpG containing plasmid pUC18k-nuoF

This study

 kp-ppk

kpG containing plasmid pUC18k-ppk

This study

 kp-xylG

kpG containing plasmid pUC18k-xylG

This study

 ΔadhE

An alcohol dehydrogenase gene-deficient mutant of kpG

This study

 ΔsfcA

An malate dehydrogenase gene-deficient mutant of kpG

This study

Plasmids

 pUC18k

Kamr, pUC ori, Plac, MCS

Lab archive

 pDK7

Cmr

Lab archive

 pUC18k-araB

Kamr, pUC18k containing araB gene

This study

 pUC18k-xylG

Kamr, pUC18k containing xylG gene

This study

 pUC18k-tktA

Kamr, pUC18k containing tktA gene

This study

 pUC18k-pntA

Kamr, pUC18k containing pntA gene

This study

 pUC18k-gapA

Kamr, pUC18k containing gapA gene

This study

 pUC18k-nuoF

Kamr, pUC18k containing nuoF gene

This study

 pUC18k-ppk

Kamr, pUC18k containing ppk gene

This study

 pJTOOL-3

Suicide vector hphr SacB oriT

Lab archive

 pMQ300

hphr

Lab archive

 pFLP2

Ampr encodes FLP recombinase

Lab archive

 p-adhE

Hphr, pJTOOL-3 derivative, where a adhE::HphFRT cassettes was inserted

This study

 p-sfcA

Hphr, pJTOOL-3 derivative, where a sfcA::HphFRT cassettes was inserted

This study