TY - JOUR AU - Thompson, P. B. PY - 2012 DA - 2012// TI - The agricultural ethics of biofuels: the food vs. fuel debate JO - Agriculture VL - 2 UR - https://doi.org/10.3390/agriculture2040339 DO - 10.3390/agriculture2040339 ID - Thompson2012 ER - TY - JOUR AU - Converse, A. O. PY - 2007 DA - 2007// TI - Renewable energy in the United States JO - Appl Biochem Biotechnol VL - 137 ID - Converse2007 ER - TY - JOUR AU - Larkum, A. W. AU - Ross, I. L. AU - Kruse, O. AU - Hankamer, B. PY - 2012 DA - 2012// TI - Selection, breeding and engineering of microalgae for bioenergy and biofuel production JO - Trends Biotechnol VL - 30 UR - https://doi.org/10.1016/j.tibtech.2011.11.003 DO - 10.1016/j.tibtech.2011.11.003 ID - Larkum2012 ER - TY - JOUR AU - Moon, H. S. AU - Abercrombie, J. M. AU - Kausch, A. P. AU - Stewart, C. N. PY - 2010 DA - 2010// TI - Sustainable use of biotechnology for bioenergy feedstocks JO - Environ Manage VL - 46 UR - https://doi.org/10.1007/s00267-010-9503-5 DO - 10.1007/s00267-010-9503-5 ID - Moon2010 ER - TY - JOUR AU - Iiyama, K. AU - Lam, T. B. -. T. AU - Stone, B. A. PY - 1994 DA - 1994// TI - Covalent cross-links in the cell wall JO - Plant Physiol VL - 104 UR - https://doi.org/10.1104/pp.104.2.315 DO - 10.1104/pp.104.2.315 ID - Iiyama1994 ER - TY - JOUR AU - Hatfield, R. AU - Ralph, J. AU - Grabber, J. PY - 1999 DA - 1999// TI - Cell wall structural foundations: molecular basis for improving forage digestibilities JO - Crop Sci VL - 39 UR - https://doi.org/10.2135/cropsci1999.0011183X003900010005x DO - 10.2135/cropsci1999.0011183X003900010005x ID - Hatfield1999 ER - TY - JOUR AU - Hatfield, R. D. AU - Rancour, D. M. AU - Marita, J. M. PY - 2017 DA - 2017// TI - Grass cell walls: a story of cross-linking JO - Front Plant Sci VL - 7 UR - https://doi.org/10.3389/fpls.2016.02056 DO - 10.3389/fpls.2016.02056 ID - Hatfield2017 ER - TY - JOUR AU - Nishimura, H. AU - Kamiya, A. AU - Nagata, T. AU - Katahira, M. AU - Watanabe, T. PY - 2018 DA - 2018// TI - Direct evidence for α ether linkage between lignin and carbohydrates in wood cell walls JO - Sci Rep VL - 8 UR - https://doi.org/10.1038/s41598-018-24328-9 DO - 10.1038/s41598-018-24328-9 ID - Nishimura2018 ER - TY - JOUR AU - Boerjan, W. AU - Ralph, J. AU - Baucher, M. PY - 2003 DA - 2003// TI - Lignin biosynthesis JO - Annu Rev Plant Biol VL - 54 UR - https://doi.org/10.1146/annurev.arplant.54.031902.134938 DO - 10.1146/annurev.arplant.54.031902.134938 ID - Boerjan2003 ER - TY - JOUR AU - Xie, M. AU - Zhang, J. AU - Tschaplinski, T. J. AU - Tuskan, G. A. AU - Chen, J. -. G. AU - Muchero, W. PY - 2018 DA - 2018// TI - Regulation of lignin biosynthesis and its role in growth-defense tradeoffs JO - Front Plant Sci VL - 9 UR - https://doi.org/10.3389/fpls.2018.01427 DO - 10.3389/fpls.2018.01427 ID - Xie2018 ER - TY - JOUR AU - Jung, H. AU - Allen, M. PY - 1995 DA - 1995// TI - Characteristics of plant cell walls affecting intake and digestibility of forages by ruminants JO - J Anim Sci VL - 73 UR - https://doi.org/10.2527/1995.7392774x DO - 10.2527/1995.7392774x ID - Jung1995 ER - TY - JOUR AU - Abdeshahian, P. AU - Dashti, M. AU - Kalil, M. S. AU - Yusoff, W. M. W. PY - 2010 DA - 2010// TI - Production of biofuel using biomass as a sustainable biological resource JO - Biotechnology VL - 9 UR - https://doi.org/10.3923/biotech.2010.274.282 DO - 10.3923/biotech.2010.274.282 ID - Abdeshahian2010 ER - TY - JOUR AU - Bonawitz, N. D. AU - Chapple, C. PY - 2010 DA - 2010// TI - The genetics of lignin biosynthesis: connecting genotype to phenotype JO - Annu Rev Genet VL - 44 UR - https://doi.org/10.1146/annurev-genet-102209-163508 DO - 10.1146/annurev-genet-102209-163508 ID - Bonawitz2010 ER - TY - JOUR AU - Isikgor, F. H. AU - Becer, C. R. PY - 2015 DA - 2015// TI - Lignocellulosic biomass: a sustainable platform for the production of bio-based chemicals and polymers JO - Polym Chem VL - 6 UR - https://doi.org/10.1039/C5PY00263J DO - 10.1039/C5PY00263J ID - Isikgor2015 ER - TY - JOUR AU - Saini, J. K. AU - Saini, R. AU - Tewari, L. PY - 2015 DA - 2015// TI - Lignocellulosic agriculture wastes as biomass feedstocks for second-generation bioethanol production: concepts and recent developments JO - 3 Biotech VL - 5 UR - https://doi.org/10.1007/s13205-014-0246-5 DO - 10.1007/s13205-014-0246-5 ID - Saini2015 ER - TY - JOUR AU - Jung, J. G. AU - Samac, D. A. AU - Sarath, G. PY - 2012 DA - 2012// TI - Modifying crops to increase cell wall digestibility JO - Plant Sci VL - 185 UR - https://doi.org/10.1016/j.plantsci.2011.10.014 DO - 10.1016/j.plantsci.2011.10.014 ID - Jung2012 ER - TY - JOUR AU - Barros, J. AU - Serk, H. AU - Granlund, I. AU - Pesquet, E. PY - 2015 DA - 2015// TI - The cell biology of lignification in higher plants JO - Ann Bot VL - 115 UR - https://doi.org/10.1093/aob/mcv046 DO - 10.1093/aob/mcv046 ID - Barros2015 ER - TY - JOUR AU - Schuetz, M. AU - Smith, R. AU - Ellis, B. PY - 2012 DA - 2012// TI - Xylem tissue specification, patterning, and differentiation mechanisms JO - J Exp Bot VL - 64 UR - https://doi.org/10.1093/jxb/ers287 DO - 10.1093/jxb/ers287 ID - Schuetz2012 ER - TY - JOUR AU - Smith, A. AU - Giordano, A. AU - Mouradov, A. PY - 2013 DA - 2013// TI - Metabolic reprogramming of lignin biosynthesis in crops JO - Signpost Open Access J NanoPhotoBioSciences VL - 1 ID - Smith2013 ER - TY - JOUR AU - Fraser, C. M. AU - Chapple, C. PY - 2011 DA - 2011// TI - The phenylpropanoid pathway in Arabidopsis JO - Arabidopsis Book. VL - 8 UR - https://doi.org/10.1199/tab.0152 DO - 10.1199/tab.0152 ID - Fraser2011 ER - TY - JOUR AU - Zhong, R. AU - Morrison, W. H. AU - Himmelsbach, D. S. AU - Poole, F. L. AU - Ye, Z. -. H. PY - 2000 DA - 2000// TI - Essential role of caffeoyl coenzyme A O-methyltransferase in lignin biosynthesis in woody poplar plants JO - Plant Physiol VL - 124 UR - https://doi.org/10.1104/pp.124.2.563 DO - 10.1104/pp.124.2.563 ID - Zhong2000 ER - TY - JOUR AU - Do, C. -. T. AU - Pollet, B. AU - Thévenin, J. AU - Sibout, R. AU - Denoue, D. AU - Barrière, Y. AU - Lapierre, C. AU - Jouanin, L. PY - 2007 DA - 2007// TI - Both caffeoyl Coenzyme A 3-O-methyltransferase 1 and caffeic acid O-methyltransferase 1 are involved in redundant functions for lignin, flavonoids and sinapoyl malate biosynthesis in Arabidopsis JO - Planta VL - 226 UR - https://doi.org/10.1007/s00425-007-0558-3 DO - 10.1007/s00425-007-0558-3 ID - Do2007 ER - TY - JOUR AU - Vanholme, R. AU - Storme, V. AU - Vanholme, B. AU - Sundin, L. AU - Christensen, J. H. AU - Goeminne, G. AU - Halpin, C. AU - Rohde, A. AU - Morreel, K. AU - Boerjan, W. PY - 2012 DA - 2012// TI - A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis JO - Plant Cell VL - 24 UR - https://doi.org/10.1105/tpc.112.102574 DO - 10.1105/tpc.112.102574 ID - Vanholme2012 ER - TY - JOUR AU - Ye, Z. -. H. AU - Kneusel, R. E. AU - Matern, U. AU - Varner, J. E. PY - 1994 DA - 1994// TI - An alternative methylation pathway in lignin biosynthesis in Zinnia JO - Plant Cell VL - 6 UR - https://doi.org/10.1105/tpc.6.10.1427 DO - 10.1105/tpc.6.10.1427 ID - Ye1994 ER - TY - JOUR AU - Zhong, R. AU - Morrison, W. H. AU - Negrel, J. AU - Ye, Z. -. H. PY - 1998 DA - 1998// TI - Dual methylation pathways in lignin biosynthesis JO - Plant Cell VL - 10 UR - https://doi.org/10.1105/tpc.10.12.2033 DO - 10.1105/tpc.10.12.2033 ID - Zhong1998 ER - TY - JOUR AU - Eckardt, N. A. PY - 2002 DA - 2002// TI - Probing the mysteries of lignin biosynthesis: the crystal structure of caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase provides new insights JO - Plant Cell. VL - 14 UR - https://doi.org/10.1105/tpc.140610 DO - 10.1105/tpc.140610 ID - Eckardt2002 ER - TY - JOUR AU - Pinçon, G. AU - Maury, S. AU - Hoffmann, L. AU - Geoffroy, P. AU - Lapierre, C. AU - Pollet, B. AU - Legrand, M. PY - 2001 DA - 2001// TI - Repression of O-methyltransferase genes in transgenic tobacco affects lignin synthesis and plant growth JO - Phytochemistry VL - 57 UR - https://doi.org/10.1016/S0031-9422(01)00098-X DO - 10.1016/S0031-9422(01)00098-X ID - Pinçon2001 ER - TY - JOUR AU - Meyermans, H. AU - Morreel, K. AU - Lapierre, C. AU - Pollet, B. AU - Bruyn, A. AU - Busson, R. AU - Herdewijn, P. AU - Devreese, B. AU - Beeumen, J. AU - Marita, J. M. PY - 2000 DA - 2000// TI - Modifications in lignin and accumulation of phenolic glucosides in poplar xylem upon down-regulation of caffeoyl-coenzyme A O-methyltransferase, an enzyme involved in lignin biosynthesis JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.M006915200 DO - 10.1074/jbc.M006915200 ID - Meyermans2000 ER - TY - JOUR AU - Marita, J. M. AU - Ralph, J. AU - Hatfield, R. D. AU - Guo, D. AU - Chen, F. AU - Dixon, R. A. PY - 2003 DA - 2003// TI - Structural and compositional modifications in lignin of transgenic alfalfa down-regulated in caffeic acid 3-O-methyltransferase and caffeoyl coenzyme A 3-O-methyltransferase JO - Phytochemistry VL - 62 UR - https://doi.org/10.1016/S0031-9422(02)00434-X DO - 10.1016/S0031-9422(02)00434-X ID - Marita2003 ER - TY - JOUR AU - Chen, F. AU - Dixon, R. A. PY - 2007 DA - 2007// TI - Lignin modification improves fermentable sugar yields for biofuel production JO - Nat Biotechnol VL - 25 UR - https://doi.org/10.1038/nbt1316 DO - 10.1038/nbt1316 ID - Chen2007 ER - TY - JOUR AU - Guo, D. AU - Chen, F. AU - Inoue, K. AU - Blount, J. W. AU - Dixon, R. A. PY - 2001 DA - 2001// TI - Downregulation of caffeic acid 3-O-methyltransferase and caffeoyl CoA 3-O-methyltransferase in transgenic alfalfa: impacts on lignin structure and implications for the biosynthesis of G and S lignin JO - Plant Cell VL - 13 UR - https://doi.org/10.1105/tpc.13.1.73 DO - 10.1105/tpc.13.1.73 ID - Guo2001 ER - TY - JOUR AU - Day, A. AU - Neutelings, G. AU - Nolin, F. AU - Grec, S. AU - Habrant, A. AU - Crônier, D. AU - Maher, B. AU - Rolando, C. AU - David, H. AU - Chabbert, B. PY - 2009 DA - 2009// TI - Caffeoyl coenzyme A O-methyltransferase down-regulation is associated with modifications in lignin and cell-wall architecture in flax secondary xylem JO - Plant Physiol Biochem VL - 47 UR - https://doi.org/10.1016/j.plaphy.2008.09.011 DO - 10.1016/j.plaphy.2008.09.011 ID - Day2009 ER - TY - JOUR AU - Wagner, A. AU - Tobimatsu, Y. AU - Phillips, L. AU - Flint, H. AU - Torr, K. AU - Donaldson, L. AU - Pears, L. AU - Ralph, J. PY - 2011 DA - 2011// TI - CCoAOMT suppression modifies lignin composition in Pinus radiata JO - Plant J VL - 67 UR - https://doi.org/10.1111/j.1365-313X.2011.04580.x DO - 10.1111/j.1365-313X.2011.04580.x ID - Wagner2011 ER - TY - JOUR AU - Li, X. AU - Chen, W. AU - Zhao, Y. AU - Xiang, Y. AU - Jiang, H. AU - Zhu, S. AU - Cheng, B. PY - 2013 DA - 2013// TI - Downregulation of caffeoyl-CoA O-methyltransferase (CCoAOMT) by RNA interference leads to reduced lignin production in maize straw JO - Genetics Mol Biol VL - 36 UR - https://doi.org/10.1590/S1415-47572013005000039 DO - 10.1590/S1415-47572013005000039 ID - Li2013 ER - TY - JOUR AU - Acker, R. AU - Vanholme, R. AU - Storme, V. AU - Mortimer, J. C. AU - Dupree, P. AU - Boerjan, W. PY - 2013 DA - 2013// TI - Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana JO - Biotechnol Biofuels VL - 6 UR - https://doi.org/10.1186/1754-6834-6-46 DO - 10.1186/1754-6834-6-46 ID - Acker2013 ER - TY - JOUR AU - Raes, J. AU - Rohde, A. AU - Christensen, J. H. AU - Peer, Y. AU - Boerjan, W. PY - 2003 DA - 2003// TI - Genome-wide characterization of the lignification toolbox in Arabidopsis JO - Plant Physiol VL - 133 UR - https://doi.org/10.1104/pp.103.026484 DO - 10.1104/pp.103.026484 ID - Raes2003 ER - TY - JOUR AU - Zhang, Y. AU - Sun, K. AU - Sandoval, F. J. AU - Santiago, K. AU - Roje, S. PY - 2010 DA - 2010// TI - One-carbon metabolism in plants: characterization of a plastid serine hydroxymethyltransferase JO - Biochem J VL - 430 UR - https://doi.org/10.1042/BJ20100566 DO - 10.1042/BJ20100566 ID - Zhang2010 ER - TY - JOUR AU - Hanson, A. D. AU - Gage, D. A. AU - Shachar-Hill, Y. PY - 2000 DA - 2000// TI - Plant one-carbon metabolism and its engineering JO - Trends Plant Sci VL - 5 UR - https://doi.org/10.1016/S1360-1385(00)01599-5 DO - 10.1016/S1360-1385(00)01599-5 ID - Hanson2000 ER - TY - JOUR AU - Hanson, A. D. AU - Roje, S. PY - 2001 DA - 2001// TI - One-carbon metabolism in higher plants JO - Annu Rev Plant Biol VL - 52 UR - https://doi.org/10.1146/annurev.arplant.52.1.119 DO - 10.1146/annurev.arplant.52.1.119 ID - Hanson2001 ER - TY - JOUR AU - Shen, B. AU - Li, C. AU - Tarczynski, M. C. PY - 2002 DA - 2002// TI - High free-methionine and decreased lignin content result from a mutation in the Arabidopsis S-adenosyl-l-methionine synthetase 3 gene JO - Plant J VL - 29 UR - https://doi.org/10.1046/j.1365-313X.2002.01221.x DO - 10.1046/j.1365-313X.2002.01221.x ID - Shen2002 ER - TY - JOUR AU - Tang, H. M. AU - Liu, S. AU - Hill-Skinner, S. AU - Wu, W. AU - Reed, D. AU - Yeh, C. T. AU - Nettleton, D. AU - Schnable, P. S. PY - 2014 DA - 2014// TI - The maize brown midrib2 (bm2) gene encodes a methylenetetrahydrofolate reductase that contributes to lignin accumulation JO - Plant J VL - 77 UR - https://doi.org/10.1111/tpj.12394 DO - 10.1111/tpj.12394 ID - Tang2014 ER - TY - JOUR AU - Li, L. AU - Hill-Skinner, S. AU - Liu, S. AU - Beuchle, D. AU - Tang, H. M. AU - Yeh, C. T. AU - Nettleton, D. AU - Schnable, P. S. PY - 2015 DA - 2015// TI - The maize brown midrib4 (bm4) gene encodes a functional folylpolyglutamate synthase JO - Plant J VL - 81 UR - https://doi.org/10.1111/tpj.12745 DO - 10.1111/tpj.12745 ID - Li2015 ER - TY - JOUR AU - Srivastava, A. C. AU - Chen, F. AU - Ray, T. AU - Pattathil, S. AU - Peña, M. J. AU - Avci, U. AU - Li, H. AU - Huhman, D. V. AU - Backe, J. AU - Urbanowicz, B. PY - 2015 DA - 2015// TI - Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis JO - Biotechnol Biofuels VL - 8 UR - https://doi.org/10.1186/s13068-015-0403-z DO - 10.1186/s13068-015-0403-z ID - Srivastava2015 ER - TY - JOUR AU - Shigeto, J. AU - Itoh, Y. AU - Hirao, S. AU - Ohira, K. AU - Fujita, K. AU - Tsutsumi, Y. PY - 2015 DA - 2015// TI - Simultaneously disrupting AtPrx2, AtPrx25 and AtPrx71 alters lignin content and structure in Arabidopsis stem JO - J Integr Plant Biol VL - 57 UR - https://doi.org/10.1111/jipb.12334 DO - 10.1111/jipb.12334 ID - Shigeto2015 ER - TY - JOUR AU - Vries, L. AU - Vanholme, R. AU - Acker, R. AU - Meester, B. AU - Sundin, L. AU - Boerjan, W. PY - 2018 DA - 2018// TI - Stacking of a low-lignin trait with an increased guaiacyl and 5-hydroxyguaiacyl unit trait leads to additive and synergistic effects on saccharification efficiency in Arabidopsis thaliana JO - Biotechnol Biofuels VL - 11 UR - https://doi.org/10.1186/s13068-018-1257-y DO - 10.1186/s13068-018-1257-y ID - Vries2018 ER - TY - JOUR AU - Chabannes, M. AU - Barakate, A. AU - Lapierre, C. AU - Marita, J. M. AU - Ralph, J. AU - Pean, M. AU - Danoun, S. AU - Halpin, C. AU - Grima-Pettenati, J. AU - Boudet, A. M. PY - 2001 DA - 2001// TI - Strong decrease in lignin content without significant alteration of plant development is induced by simultaneous down-regulation of cinnamoyl CoA reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD) in tobacco plants JO - Plant J VL - 28 UR - https://doi.org/10.1046/j.1365-313X.2001.01140.x DO - 10.1046/j.1365-313X.2001.01140.x ID - Chabannes2001 ER - TY - JOUR AU - Nelson, R. S. AU - Stewart, C. N. AU - Gou, J. AU - Holladay, S. AU - Gallego-Giraldo, L. AU - Flanagan, A. AU - Mann, D. G. AU - Hisano, H. AU - Wuddineh, W. A. AU - Poovaiah, C. R. PY - 2017 DA - 2017// TI - Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitrance JO - Biotechnol Biofuels VL - 10 UR - https://doi.org/10.1186/s13068-017-0991-x DO - 10.1186/s13068-017-0991-x ID - Nelson2017 ER - TY - JOUR AU - Bonawitz, N. D. AU - Im Kim, J. AU - Tobimatsu, Y. AU - Ciesielski, P. N. AU - Anderson, N. A. AU - Ximenes, E. AU - Maeda, J. AU - Ralph, J. AU - Donohoe, B. S. AU - Ladisch, M. PY - 2014 DA - 2014// TI - Disruption of mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant JO - Nature VL - 509 UR - https://doi.org/10.1038/nature13084 DO - 10.1038/nature13084 ID - Bonawitz2014 ER - TY - JOUR AU - Anderson, N. A. AU - Tobimatsu, Y. AU - Ciesielski, P. N. AU - Ximenes, E. AU - Ralph, J. AU - Donohoe, B. S. AU - Ladisch, M. AU - Chapple, C. PY - 2015 DA - 2015// TI - Manipulation of guaiacyl and syringyl monomer biosynthesis in an Arabidopsis cinnamyl alcohol dehydrogenase mutant results in atypical lignin biosynthesis and modified cell wall structure JO - Plant Cell VL - 27 UR - https://doi.org/10.1105/tpc.15.00373 DO - 10.1105/tpc.15.00373 ID - Anderson2015 ER - TY - JOUR AU - Wu, Z. AU - Wang, N. AU - Hisano, H. AU - Cao, Y. AU - Wu, F. AU - Liu, W. AU - Bao, Y. AU - Wang, Z. Y. AU - Fu, C. PY - 2018 DA - 2018// TI - Simultaneous regulation of F5H in COMT-RNA i transgenic switchgrass alters effects of COMT suppression on syringyl lignin biosynthesis JO - Plant Biotechnol J VL - 17 UR - https://doi.org/10.1111/pbi.13019 DO - 10.1111/pbi.13019 ID - Wu2018 ER - TY - JOUR AU - Srivastava, A. C. AU - Ramos-Parra, P. A. AU - Bedair, M. AU - Robledo-Hernández, A. L. AU - Tang, Y. AU - Sumner, L. W. AU - Garza, R. I. D. AU - Blancaflor, E. B. PY - 2011 DA - 2011// TI - The folylpolyglutamate synthetase plastidial isoform is required for postembryonic root development in Arabidopsis JO - Plant Physiol VL - 155 UR - https://doi.org/10.1104/pp.110.168278 DO - 10.1104/pp.110.168278 ID - Srivastava2011 ER - TY - JOUR AU - Barnes, W. J. AU - Anderson, C. T. PY - 2017 DA - 2017// TI - Acetyl bromide soluble lignin (ABSL) assay for total lignin quantification from plant biomass JO - Bio-Protoc VL - 7 UR - https://doi.org/10.21769/BioProtoc.2149 DO - 10.21769/BioProtoc.2149 ID - Barnes2017 ER - TY - JOUR AU - Li, M. AU - Pu, Y. AU - Ragauskas, A. J. PY - 2016 DA - 2016// TI - Current understanding of the correlation of lignin structure with biomass recalcitrance JO - Front Chem VL - 4 UR - https://doi.org/10.3389/fchem.2016.00045 DO - 10.3389/fchem.2016.00045 ID - Li2016 ER - TY - JOUR AU - Albalasmeh, A. A. AU - Berhe, A. A. AU - Ghezzehei, T. A. PY - 2013 DA - 2013// TI - A new method for rapid determination of carbohydrate and total carbon concentrations using UV spectrophotometry JO - Carbohyd Polym VL - 97 UR - https://doi.org/10.1016/j.carbpol.2013.04.072 DO - 10.1016/j.carbpol.2013.04.072 ID - Albalasmeh2013 ER - TY - JOUR AU - Zhang, X. AU - Gou, M. AU - Liu, C. -. J. PY - 2013 DA - 2013// TI - Arabidopsis Kelch repeat F-box proteins regulate phenylpropanoid biosynthesis via controlling the turnover of phenylalanine ammonia-lyase JO - Plant Cell VL - 25 UR - https://doi.org/10.1105/tpc.113.119644 DO - 10.1105/tpc.113.119644 ID - Zhang2013 ER - TY - JOUR AU - Zhang, X. AU - Gou, M. AU - Guo, C. AU - Yang, H. AU - Liu, C. -. J. PY - 2015 DA - 2015// TI - Down-regulation of Kelch domain-containing F-box protein in Arabidopsis enhances the production of (poly) phenols and tolerance to ultraviolet radiation JO - Plant Physiol VL - 167 UR - https://doi.org/10.1104/pp.114.249136 DO - 10.1104/pp.114.249136 ID - Zhang2015 ER - TY - JOUR AU - Rahikainen, M. AU - Alegre, S. AU - Trotta, A. AU - Pascual, J. AU - Kangasjärvi, S. PY - 2018 DA - 2018// TI - Trans-methylation reactions in plants: focus on the activated methyl cycle JO - Physiol Plant VL - 162 UR - https://doi.org/10.1111/ppl.12619 DO - 10.1111/ppl.12619 ID - Rahikainen2018 ER - TY - JOUR AU - Ranocha, P. AU - McNeil, S. D. AU - Ziemak, M. J. AU - Li, C. AU - Tarczynski, M. C. AU - Hanson, A. D. PY - 2001 DA - 2001// TI - The S-methylmethionine cycle in angiosperms: ubiquity, antiquity and activity JO - Plant J VL - 25 UR - https://doi.org/10.1046/j.1365-313x.2001.00988.x DO - 10.1046/j.1365-313x.2001.00988.x ID - Ranocha2001 ER - TY - JOUR AU - Baxter, H. L. AU - Mazarei, M. AU - Labbe, N. AU - Kline, L. M. AU - Cheng, Q. AU - Windham, M. T. AU - Mann, D. G. AU - Fu, C. AU - Ziebell, A. AU - Sykes, R. W. PY - 2014 DA - 2014// TI - Two-year field analysis of reduced recalcitrance transgenic switchgrass JO - Plant Biotechnol J VL - 12 UR - https://doi.org/10.1111/pbi.12195 DO - 10.1111/pbi.12195 ID - Baxter2014 ER - TY - JOUR AU - Tzin, V. AU - Galili, G. PY - 2010 DA - 2010// TI - New insights into the shikimate and aromatic amino acids biosynthesis pathways in plants JO - Mol Plant VL - 3 UR - https://doi.org/10.1093/mp/ssq048 DO - 10.1093/mp/ssq048 ID - Tzin2010 ER - TY - JOUR AU - Herrmann, K. M. PY - 1995 DA - 1995// TI - The shikimate pathway: early steps in the biosynthesis of aromatic compounds JO - Plant Cell VL - 7 UR - https://doi.org/10.1105/tpc.7.7.907 DO - 10.1105/tpc.7.7.907 ID - Herrmann1995 ER - TY - JOUR AU - Yin, R. AU - Messner, B. AU - Faus-Kessler, T. AU - Hoffmann, T. AU - Schwab, W. AU - Hajirezaei, M. -. R. AU - Saint, P. a. u. l. V. AU - Heller, W. AU - Schäffner, A. R. PY - 2012 DA - 2012// TI - Feedback inhibition of the general phenylpropanoid and flavonol biosynthetic pathways upon a compromised flavonol-3-O-glycosylation JO - J Exp Bot VL - 63 UR - https://doi.org/10.1093/jxb/err416 DO - 10.1093/jxb/err416 ID - Yin2012 ER - TY - JOUR AU - Blount, J. W. AU - Korth, K. L. AU - Masoud, S. A. AU - Rasmussen, S. AU - Lamb, C. AU - Dixon, R. A. PY - 2000 DA - 2000// TI - Altering expression of cinnamic acid 4-hydroxylase in transgenic plants provides evidence for a feedback loop at the entry point into the phenylpropanoid pathway JO - Plant Physiol VL - 122 UR - https://doi.org/10.1104/pp.122.1.107 DO - 10.1104/pp.122.1.107 ID - Blount2000 ER - TY - JOUR AU - Gaudinier, A. AU - Tang, M. AU - Kliebenstein, D. J. PY - 2015 DA - 2015// TI - Transcriptional networks governing plant metabolism JO - Curr Plant Biol VL - 3 UR - https://doi.org/10.1016/j.cpb.2015.07.002 DO - 10.1016/j.cpb.2015.07.002 ID - Gaudinier2015 ER - TY - JOUR AU - Zhang, X. AU - Liu, C. J. PY - 2015 DA - 2015// TI - Multifaceted regulations of gateway enzyme phenylalanine ammonia-lyase in the biosynthesis of phenylpropanoids JO - Mol Plant VL - 8 UR - https://doi.org/10.1016/j.molp.2014.11.001 DO - 10.1016/j.molp.2014.11.001 ID - Zhang2015 ER - TY - JOUR AU - Zhou, R. AU - Jackson, L. AU - Shadle, G. AU - Nakashima, J. AU - Temple, S. AU - Chen, F. AU - Dixon, R. A. PY - 2010 DA - 2010// TI - Distinct cinnamoyl CoA reductases involved in parallel routes to lignin in Medicago truncatula JO - Proc Natl Acad Sci VL - 107 UR - https://doi.org/10.1073/pnas.1012900107 DO - 10.1073/pnas.1012900107 ID - Zhou2010 ER - TY - JOUR AU - Derikvand, M. M. AU - Sierra, J. B. AU - Ruel, K. AU - Pollet, B. AU - Do, C. -. T. AU - Thévenin, J. AU - Buffard, D. AU - Jouanin, L. AU - Lapierre, C. PY - 2008 DA - 2008// TI - Redirection of the phenylpropanoid pathway to feruloyl malate in Arabidopsis mutants deficient for cinnamoyl-CoA reductase 1 JO - Planta VL - 227 UR - https://doi.org/10.1007/s00425-007-0669-x DO - 10.1007/s00425-007-0669-x ID - Derikvand2008 ER - TY - JOUR AU - Leple, J. -. C. AU - Dauwe, R. AU - Morreel, K. AU - Storme, V. AU - Lapierre, C. AU - Pollet, B. AU - Naumann, A. AU - Kang, K. -. Y. AU - Kim, H. AU - Ruel, K. PY - 2007 DA - 2007// TI - Downregulation of cinnamoyl-coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure JO - Plant Cell VL - 19 UR - https://doi.org/10.1105/tpc.107.054148 DO - 10.1105/tpc.107.054148 ID - Leple2007 ER - TY - JOUR AU - Fu, C. AU - Mielenz, J. R. AU - Xiao, X. AU - Ge, Y. AU - Hamilton, C. Y. AU - Rodriguez, M. AU - Chen, F. AU - Foston, M. AU - Ragauskas, A. AU - Bouton, J. PY - 2011 DA - 2011// TI - Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass JO - Proc Natl Acad Sci VL - 108 UR - https://doi.org/10.1073/pnas.1100310108 DO - 10.1073/pnas.1100310108 ID - Fu2011 ER - TY - JOUR AU - Yamauchi, K. AU - Yasuda, S. AU - Fukushima, K. PY - 2002 DA - 2002// TI - Evidence for the biosynthetic pathway from sinapic acid to syringyl lignin using labeled sinapic acid with stable isotope at both methoxy groups in Robinia pseudoacacia and Nerium indicum JO - J Agric Food Chem VL - 50 UR - https://doi.org/10.1021/jf011565x DO - 10.1021/jf011565x ID - Yamauchi2002 ER - TY - JOUR AU - Acker, R. AU - Déjardin, A. AU - Desmet, S. AU - Hoengenaert, L. AU - Vanholme, R. AU - Morreel, K. AU - Laurans, F. AU - Kim, H. AU - Santoro, N. AU - Foster, C. PY - 2017 DA - 2017// TI - Different routes for conifer and sinapaldehyde and higher saccharification upon deficiency in the dehydrogenase CAD1 JO - Plant Physiol VL - 175 UR - https://doi.org/10.1104/pp.17.00834 DO - 10.1104/pp.17.00834 ID - Acker2017 ER - TY - JOUR AU - Hazra, S. AU - Chattopadhyay, S. PY - 2016 DA - 2016// TI - An overview of lignans with special reference to podophyllotoxin, a cytotoxic lignan JO - Chem Biol Lett VL - 3 ID - Hazra2016 ER - TY - JOUR AU - Jin, H. AU - Cominelli, E. AU - Bailey, P. AU - Parr, A. AU - Mehrtens, F. AU - Jones, J. AU - Tonelli, C. AU - Weisshaar, B. AU - Martin, C. PY - 2000 DA - 2000// TI - Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis JO - EMBO J VL - 19 UR - https://doi.org/10.1093/emboj/19.22.6150 DO - 10.1093/emboj/19.22.6150 ID - Jin2000 ER - TY - JOUR AU - Berthet, S. AU - Demont-Caulet, N. AU - Pollet, B. AU - Bidzinski, P. AU - Cézard, L. AU - Bris, P. AU - Borrega, N. AU - Hervé, J. AU - Blondet, E. AU - Balzergue, S. PY - 2011 DA - 2011// TI - Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems JO - Plant Cell VL - 23 UR - https://doi.org/10.1105/tpc.110.082792 DO - 10.1105/tpc.110.082792 ID - Berthet2011 ER - TY - JOUR AU - Zhao, Q. AU - Nakashima, J. AU - Chen, F. AU - Yin, Y. AU - Fu, C. AU - Yun, J. AU - Shao, H. AU - Wang, X. AU - Wang, Z. -. Y. AU - Dixon, R. A. PY - 2013 DA - 2013// TI - Laccase is necessary and nonredundant with peroxidase for lignin polymerization during vascular development in Arabidopsis JO - Plant Cell VL - 25 UR - https://doi.org/10.1105/tpc.113.117770 DO - 10.1105/tpc.113.117770 ID - Zhao2013 ER - TY - JOUR AU - Fernández-Pérez, F. AU - Vivar, T. AU - Pomar, F. AU - Pedreño, M. A. AU - Novo-Uzal, E. PY - 2015 DA - 2015// TI - Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana JO - J Plant Physiol VL - 175 UR - https://doi.org/10.1016/j.jplph.2014.11.006 DO - 10.1016/j.jplph.2014.11.006 ID - Fernández-Pérez2015 ER - TY - JOUR AU - Bryan, A. C. AU - Jawdy, S. AU - Gunter, L. AU - Gjersing, E. AU - Sykes, R. AU - Hinchee, M. A. AU - Winkeler, K. A. AU - Collins, C. M. AU - Engle, N. AU - Tschaplinski, T. J. PY - 2016 DA - 2016// TI - Knockdown of a laccase in Populus deltoides confers altered cell wall chemistry and increased sugar release JO - Plant Biotechnol J VL - 14 UR - https://doi.org/10.1111/pbi.12560 DO - 10.1111/pbi.12560 ID - Bryan2016 ER - TY - JOUR AU - Lin, C. -. Y. AU - Li, Q. AU - Tunlaya-Anukit, S. AU - Shi, R. AU - Sun, Y. -. H. AU - Wang, J. P. AU - Liu, J. AU - Loziuk, P. AU - Edmunds, C. W. AU - Miller, Z. D. PY - 2016 DA - 2016// TI - A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa JO - Tree Genet Genomes VL - 12 UR - https://doi.org/10.1007/s11295-016-0978-y DO - 10.1007/s11295-016-0978-y ID - Lin2016 ER - TY - BOOK AU - Weigel, D. AU - Glazebrook, J. PY - 2002 DA - 2002// TI - Arabidopsis: a laboratory manual PB - Cold Spring Harbor Laboratory Press CY - Cold Spring Harbor ID - Weigel2002 ER - TY - JOUR AU - Yang, J. AU - Worley, E. AU - Udvardi, M. PY - 2014 DA - 2014// TI - A NAP-AAO3 regulatory module promotes chlorophyll degradation via ABA biosynthesis in Arabidopsis leaves JO - Plant Cell VL - 26 UR - https://doi.org/10.1105/tpc.114.133769 DO - 10.1105/tpc.114.133769 ID - Yang2014 ER - TY - JOUR AU - Dozmorov, I. AU - Centola, M. PY - 2003 DA - 2003// TI - An associative analysis of gene expression array data JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/19.2.204 DO - 10.1093/bioinformatics/19.2.204 ID - Dozmorov2003 ER - TY - JOUR AU - Shannon, P. AU - Markiel, A. AU - Ozier, O. AU - Baliga, N. S. AU - Wang, J. T. AU - Ramage, D. AU - Amin, N. AU - Schwikowski, B. AU - Ideker, T. PY - 2003 DA - 2003// TI - Cytoscape: a software environment for integrated models of biomolecular interaction networks JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.1239303 DO - 10.1101/gr.1239303 ID - Shannon2003 ER - TY - JOUR AU - Hatfield, R. D. AU - Grabber, J. AU - Ralph, J. AU - Brei, K. PY - 1999 DA - 1999// TI - Using the acetyl bromide assay to determine lignin concentrations in herbaceous plants: some cautionary notes JO - J Agric Food Chem VL - 47 UR - https://doi.org/10.1021/jf9808776 DO - 10.1021/jf9808776 ID - Hatfield1999 ER - TY - JOUR AU - Chen, F. AU - Srinivasa Reddy, M. S. AU - Temple, S. AU - Jackson, L. AU - Shadle, G. AU - Dixon, R. A. PY - 2006 DA - 2006// TI - Multi-site genetic modulation of monolignol biosynthesis suggests new routes for formation of syringyl lignin and wall-bound ferulic acid in alfalfa (Medicago sativa L.) JO - Plant J VL - 48 UR - https://doi.org/10.1111/j.1365-313X.2006.02857.x DO - 10.1111/j.1365-313X.2006.02857.x ID - Chen2006 ER - TY - JOUR AU - Lapierre, C. AU - Pollet, B. AU - Rolando, C. PY - 1995 DA - 1995// TI - New insights into the molecular architecture of hardwood lignins by chemical degradative methods JO - Res Chem Intermed VL - 21 UR - https://doi.org/10.1007/BF03052266 DO - 10.1007/BF03052266 ID - Lapierre1995 ER - TY - BOOK AU - Nielsen, S. S. PY - 2010 DA - 2010// TI - Phenol-sulfuric acid method for total carbohydrates. Food analysis laboratory manual PB - Springer CY - Berlin ID - Nielsen2010 ER - TY - JOUR AU - Pu, Y. AU - Chen, F. AU - Ziebell, A. AU - Davison, B. H. AU - Ragauskas, A. J. PY - 2009 DA - 2009// TI - NMR characterization of C3H and HCT down-regulated alfalfa lignin JO - BioEnergy Res VL - 2 UR - https://doi.org/10.1007/s12155-009-9056-8 DO - 10.1007/s12155-009-9056-8 ID - Pu2009 ER - TY - JOUR AU - Hu, K. AU - Westler, W. M. AU - Markley, J. L. PY - 2011 DA - 2011// TI - Simultaneous quantification and identification of individual chemicals in metabolite mixtures by two-dimensional extrapolated time-zero 1H–13C HSQC (HSQC0) JO - J Am Chem Soc VL - 133 UR - https://doi.org/10.1021/ja1095304 DO - 10.1021/ja1095304 ID - Hu2011 ER - TY - JOUR AU - Costa, R. M. AU - Pattathil, S. AU - Avci, U. AU - Lee, S. J. AU - Hazen, S. P. AU - Winters, A. AU - Hahn, M. G. AU - Bosch, M. PY - 2017 DA - 2017// TI - A cell wall reference pro for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin JO - New Phytol VL - 213 UR - https://doi.org/10.1111/nph.14306 DO - 10.1111/nph.14306 ID - Costa2017 ER - TY - JOUR AU - Shen, H. AU - Poovaiah, C. R. AU - Ziebell, A. AU - Tschaplinski, T. J. AU - Pattathil, S. AU - Gjersing, E. AU - Engle, N. L. AU - Katahira, R. AU - Pu, Y. AU - Sykes, R. PY - 2013 DA - 2013// TI - Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production JO - Biotechnology for Biofuels VL - 6 UR - https://doi.org/10.1186/1754-6834-6-71 DO - 10.1186/1754-6834-6-71 ID - Shen2013 ER - TY - JOUR AU - Pattathil, S. AU - Saffold, T. AU - Gallego-Giraldo, L. AU - O’Neill, M. AU - York, W. S. AU - Dixon, R. A. AU - Hahn, M. G. PY - 2012 DA - 2012// TI - Changes in cell wall carbohydrate extractability are correlated with reduced recalcitrance of HCT downregulated alfalfa biomass JO - Ind Biotechnol VL - 8 UR - https://doi.org/10.1089/ind.2012.0013 DO - 10.1089/ind.2012.0013 ID - Pattathil2012 ER - TY - JOUR AU - Tschaplinski, T. J. AU - Standaert, R. F. AU - Engle, N. L. AU - Martin, M. Z. AU - Sangha, A. K. AU - Parks, J. M. AU - Smith, J. C. AU - Samuel, R. AU - Jiang, N. AU - Pu, Y. PY - 2012 DA - 2012// TI - Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog JO - Biotechnol Biofuels VL - 5 UR - https://doi.org/10.1186/1754-6834-5-71 DO - 10.1186/1754-6834-5-71 ID - Tschaplinski2012 ER - TY - JOUR AU - Cossins, E. A. AU - Chen, L. PY - 1997 DA - 1997// TI - Folates and one-carbon metabolism in plants and fungi JO - Phytochemistry VL - 45 UR - https://doi.org/10.1016/S0031-9422(96)00833-3 DO - 10.1016/S0031-9422(96)00833-3 ID - Cossins1997 ER - TY - JOUR AU - Hanson, A. D. AU - Gregory, J. F. PY - 2011 DA - 2011// TI - Folate biosynthesis, turnover, and transport in plants JO - Annu Rev Plant Biol VL - 62 UR - https://doi.org/10.1146/annurev-arplant-042110-103819 DO - 10.1146/annurev-arplant-042110-103819 ID - Hanson2011 ER - TY - JOUR AU - Collakova, E. AU - Goyer, A. AU - Naponelli, V. AU - Krassovskaya, I. AU - Gregory, J. F. AU - Hanson, A. D. AU - Shachar-Hill, Y. PY - 2008 DA - 2008// TI - Arabidopsis 10-formyl tetrahydrofolate deformylases are essential for photorespiration JO - Plant Cell VL - 20 UR - https://doi.org/10.1105/tpc.108.058701 DO - 10.1105/tpc.108.058701 ID - Collakova2008 ER - TY - JOUR AU - Tzin, V. AU - Galili, G. PY - 2010 DA - 2010// TI - The biosynthetic pathways for shikimate and aromatic amino acids in Arabidopsis thaliana JO - Arabidopsis Book VL - 8 UR - https://doi.org/10.1199/tab.0132 DO - 10.1199/tab.0132 ID - Tzin2010 ER - TY - JOUR AU - Tohge, T. AU - Watanabe, M. AU - Hoefgen, R. AU - Fernie, A. R. PY - 2013 DA - 2013// TI - Shikimate and phenylalanine biosynthesis in the green lineage JO - Front Plant Sci VL - 4 UR - https://doi.org/10.3389/fpls.2013.00062 DO - 10.3389/fpls.2013.00062 ID - Tohge2013 ER - TY - JOUR AU - Rinaldi, R. AU - Jastrzebski, R. AU - Clough, M. T. AU - Ralph, J. AU - Kennema, M. AU - Bruijnincx, P. C. AU - Weckhuysen, B. M. PY - 2016 DA - 2016// TI - Paving the way for lignin valorisation: recent advances in bioengineering, biorefining and catalysis JO - Angew Chem Int Ed VL - 55 UR - https://doi.org/10.1002/anie.201510351 DO - 10.1002/anie.201510351 ID - Rinaldi2016 ER -