Table 2 Selected differentially expressed genes closely related to cell wall biosynthesis and C1 pathways from 6-week-old stems of fpgs1, ccoaomt1, and fpgs1ccoaomt1 plants

 At5g05980

FOLYLPOLYGLUTAMATE SYNTHETASE 1 (FPGS1)

0.08

0

1.12

0.1

0.09

0

1.10

0.7

0.08

0

 At4g34050

CAFFEOYL COENZYME A O-METHYLTRANSFERASE 1 (CCoA0MT1)

1.01

0.95

0.04

0

0.06

0

0.06

0

1.58

0.02

Phenylpropanoid/lignin biosynthesis

 At2g44130

KELCH REPEAT F-B0X 39 (KFB39): phenylpropanoid metabolic process

0.42

1.4E−138

0.12

0

0.11

0

0.27

0.00

0.90

0.29

 At3g59940

KELCH REPEAT F-BOX 5O (KFB50): phenylpropanoid metabolic process

0.64

0

0.47

0

0.44

0

0.69

1.88E−04

0.93

0.52

 At1g80440

KELCH REPEAT F-BOX 20 (KPB20): phenylpropanoid metabolic process

1.04

0.09

0.47

0

0.60

0

0.58

1.17E−05

1.29

0.15

 At3g53260

PHENYLALANINE LYASE 2 (PAL2):

1.26

4.82E−14

1.83

1.1E−14

1.73

2.3E−08

1.37

1.4E−40

0.94

0.34

 At1g80820

CINNAMOYL COA REDUCTASE (AtCCR2)

2.82

0

7.18

0

8.56

0

3.04

4.58E−45

1.19

0.23

 At1g20510

4CL-LIKE1: OPC-8:0 COA LIGASE1 (0PCLI)

2.43

0

2.55

0

2.57

0

1.06

0.60

1.01

0.93

 At2g29130

LACCASE 2 (AtLAC2)

0.37

0

1.33

6.04E−07

1.26

8.61E−05

3.45

2.25E−102

0.95

0.83

 At2g37130

PEROXIDASE 21 (AtPrx21)

1.27

3.94E−04

0.44

4.16E−33

0.34

0

0.27

2.25E−13

0.77

0.03

 At4g38620

AtMYB4: regulation of phenylpropanoid metabolic process

0.60

0

0.37

0

0.51

0

0.86

1.26E−05

1.37

1.02E−12

Cell well synthesis

 At3g28180

CELLULOSE-SYNTHASE LIKE C4 (AtCSLC4)

2.18

0

4.24

0

4.22

0

1.93

2.81E−10

1.00

0.98

 At5g57560

CELL WALL-MODIFYING ENZYME, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 22 (AtXTH22)

7.37

0

19.68

0

17.02

0

2.31

3.24E−98

0.86

0.12

 At3g16720

RING-H2 PROTEIN, TOXICOS EN LEVADURA 2

3.54

0

3.28

0

5.89

0

1.66

7.46E−22

1.79

6.18E−05

 At3g45960

EXPANSIN-LIKE A3 (EXPL3)

6.25

0

14.99

0

14.91

0

2.38

2.90E−12

0.99

0.87

 At3g45970

EXPANSIN-LIKE A1 (EXPL1)

4.17

8.27E−102

14.41

0

9.51

0

2.28

2.38E−07

0.66

0.03

 At4g38400

EXPANSIN-LIKE A2 (EXLA2)

1.31

1.56E−03

2.17

1.41E−33

2.37

9.2E−46

1.82

5.93E−04

1.09

0.38

Glucosinolates metabolism

 At4g03050

AOP3: involved in glucosinolate biosynthesis

1.08

0.54

1.07

0.01

0.31

1.19E−07

0.28

1.27E−07

0.29

0

 At1g21120

COMT-LIKE GENE: INDOLE GLUCOSINOLATE METHYLTRANSFERASE 2 (IGMT2)

1.69

0

4.70

0

4.18

0

2.47

0

0.89

0.15

 At1g21110

COMT-LIKE GENE: INDOLE GLUCOSINOLATE METHYLTRANSFERASE 3 (1GMT3)

2.83

0

3.65

3.40E−127

10.33

0

3.65

0

2.83

0

 At1g21130

COMT-LIKE GENE: INDOLE GLUCOSINOLATE METHYLTRANSFERASE 4 (IGMT4)

2.20

4.31E−06

1.69

0.009

2.93

1.32E−13

2.33

0.010

1.74

1.13E−05

One carbon metabolism

 At3g22740

HOMOCYSTEINE S-METHYLTRANSFERASE (HMT3)

1.59

5.29E−102

1.50

0

0.53

0

033

1.66E−29

0.35

0