Identification of candidate genes controlling oil content by combination of genome-wide association and transcriptome analysis in the oilseed crop Brassica napus

Xiao, Zhongchun; Zhang, Chao; Tang, Fang; Yang, Bo; Zhang, Liyuan; Liu, Jingsen; Huo, Qiang; Wang, Shufeng; Li, Shengting; Wei, Lijuan; Du, Hai; Qu, Cunmin; Lu, Kun; Li, Jiana; Li, Nannan

doi:10.1186/s13068-019-1557-x

Biotechnology for Biofuels and Bioproducts

Table 2 Markers with significant association for SOC and genes in confidence interval

From: Identification of candidate genes controlling oil content by combination of genome-wide association and transcriptome analysis in the oilseed crop Brassica napus

Chromosome	Position	SNP	P value	R ²	Confidence interval (300 kb up/downstream)	Genes in confidence interval	Detected in previous studies
A1	6244998	S1_6244998	1.86E−06	0.06489	5944998–6,544,998	BnaA01g11880D–BnaA01g13060D	SG-qOC-A1 [66]; qOC-A1-1 [54]; Bn-A01-p6560270 [36]; cqOC-A1 [8]
A3	17975486	S3_17975486	1.64E−07	0.06679	17,675,486–18,275,486	BnaA03g36150D–BnaA03g37050D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	17981854	S3_17981854	1.78E−07	0.06494	17,681,854–18,281,854	BnaA03g36170D–BnaA03g37070D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	17982022	S3_17982022	2.48E−07	0.06503	17,682,022–18,282,022	BnaA03g36170D–BnaA03g37070D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	17981872	S3_17981872	4.06E−07	0.06133	17,681,872–18,281,872	BnaA03g36170D–BnaA03g37070D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	17976024	S3_17976024	1.07E−06	0.05832	17,676,024–18,276,024	BnaA03g36160D–BnaA03g37050D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	17982457	S3_17982457	1.07E−06	0.0598	17,682,457–18,282,457	BnaA03g36170D–BnaA03g37070D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	17986408	S3_17986408	1.33E−06	0.05819	17,686,408–18,286,408	BnaA03g36180D–BnaA03g37080D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	18016213	S3_18016213	1.55E−06	0.05585	17,716,213–18,316,213	BnaA03g36240D–BnaA03g37110D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	18055410	S3_18055410	1.59E−06	0.05956	17,755,410–18,355,410	BnaA03g36320D–BnaA03g37130D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	17986377	S3_17986377	2.21E−06	0.05862	17,686,377–18,286,377	BnaA03g36180D–BnaA03g37080D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3	17982838	S3_17982838	2.45E−06	0.05525	17,682,838–18,282,838	BnaA03g36170D–BnaA03g37070D	qOC-A3-DY, qOC-A3-4-TN [10, 68]
C5	5886965	S15_5886965	1.91E−06	0.0638	5,586,965–6,186,965	BnaC05g10000D–BnaC05g10760D
C7	37164777	S17_37164777	1.41E−06	0.05992	36,864,777–37,464,777	BnaC07g33910D–BnaC07g34940D
C7	37136168	S17_37136168	1.89E−06	0.05761	36,836,168–37,436,168	BnaC07g33820D–BnaC07g34890D
C7	37142657	S17_37142657	2.27E−06	0.05463	36,842,657–37,442,657	BnaC07g33850D–BnaC07g34890D
C7	37178443	S17_37178443	2.52E−06	0.05577	36,878,443–37,478,443	BnaC07g33910D–BnaC07g34970D

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