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Table 2 Markers with significant association for SOC and genes in confidence interval

From: Identification of candidate genes controlling oil content by combination of genome-wide association and transcriptome analysis in the oilseed crop Brassica napus

Chromosome Position SNP P value R 2 Confidence interval (300 kb up/downstream) Genes in confidence interval Detected in previous studies
A1 6244998 S1_6244998 1.86E−06 0.06489 5944998–6,544,998 BnaA01g11880D–BnaA01g13060D SG-qOC-A1 [66]; qOC-A1-1 [54]; Bn-A01-p6560270 [36]; cqOC-A1 [8]
A3 17975486 S3_17975486 1.64E−07 0.06679 17,675,486–18,275,486 BnaA03g36150D–BnaA03g37050D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 17981854 S3_17981854 1.78E−07 0.06494 17,681,854–18,281,854 BnaA03g36170D–BnaA03g37070D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 17982022 S3_17982022 2.48E−07 0.06503 17,682,022–18,282,022 BnaA03g36170D–BnaA03g37070D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 17981872 S3_17981872 4.06E−07 0.06133 17,681,872–18,281,872 BnaA03g36170D–BnaA03g37070D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 17976024 S3_17976024 1.07E−06 0.05832 17,676,024–18,276,024 BnaA03g36160D–BnaA03g37050D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 17982457 S3_17982457 1.07E−06 0.0598 17,682,457–18,282,457 BnaA03g36170D–BnaA03g37070D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 17986408 S3_17986408 1.33E−06 0.05819 17,686,408–18,286,408 BnaA03g36180D–BnaA03g37080D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 18016213 S3_18016213 1.55E−06 0.05585 17,716,213–18,316,213 BnaA03g36240D–BnaA03g37110D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 18055410 S3_18055410 1.59E−06 0.05956 17,755,410–18,355,410 BnaA03g36320D–BnaA03g37130D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 17986377 S3_17986377 2.21E−06 0.05862 17,686,377–18,286,377 BnaA03g36180D–BnaA03g37080D qOC-A3-DY, qOC-A3-4-TN [10, 68]
A3 17982838 S3_17982838 2.45E−06 0.05525 17,682,838–18,282,838 BnaA03g36170D–BnaA03g37070D qOC-A3-DY, qOC-A3-4-TN [10, 68]
C5 5886965 S15_5886965 1.91E−06 0.0638 5,586,965–6,186,965 BnaC05g10000D–BnaC05g10760D  
C7 37164777 S17_37164777 1.41E−06 0.05992 36,864,777–37,464,777 BnaC07g33910D–BnaC07g34940D  
C7 37136168 S17_37136168 1.89E−06 0.05761 36,836,168–37,436,168 BnaC07g33820D–BnaC07g34890D  
C7 37142657 S17_37142657 2.27E−06 0.05463 36,842,657–37,442,657 BnaC07g33850D–BnaC07g34890D  
C7 37178443 S17_37178443 2.52E−06 0.05577 36,878,443–37,478,443 BnaC07g33910D–BnaC07g34970D