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Table 3 All genes within the confidence interval of significant related SNPs with SOC belong to ALM genes

From: Identification of candidate genes controlling oil content by combination of genome-wide association and transcriptome analysis in the oilseed crop Brassica napus

ALM genes in confidence interval At orthologs Pathways Function description
BnaC05g10520D AT1G14290 Sphingolipid biosynthesis 1 Sphingoid base hydroxylase 2 (SBH2)
BnaA01g12830D AT1G73550 Fatty acid elongation and wax biosynthesis Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
BnaC07g34330D AT3G10550 Phospholipid signaling Myotubularin-like phosphatases II superfamily
BnaA03g36710D AT3G22620 Fatty acid elongation and wax biosynthesis Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
BnaA03g37090D AT3G23530 Unknown Cyclopropane-fatty-acyl-phospholipid synthase
BnaA03g36540D AT4G11850 Phospholipid signaling Phospholipase D gamma 1 (PLDGAMMA1)
BnaC07g33970D AT4G16820 Prokaryotic galactolipid, sulfolipid, and phospholipid synthesis 2 Alpha/beta-hydrolases superfamily protein
BnaC07g34360D AT4G17483 Unknown Alpha/beta-hydrolases superfamily protein
BnaA01g12060D AT4G22240 Unknown Plastid-lipid associated protein PAP/fibrillin family protein
BnaA01g12140D AT4G22330 Sphingolipid biosynthesis 2 ATCES1
BnaA01g12150D AT4G22340 Prokaryotic galactolipid, sulfolipid, and phospholipid synthesis 1 Cytidinediphosphate diacylglycerol synthase 2 (CDS2)
BnaA01g12260D AT4G22520 Fatty acid elongation and wax biosynthesis Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
BnaA01g12290D AT4G22550 Prokaryotic galactolipid, sulfolipid, and phospholipid synthesis 1 Phosphatidic acid phosphatase (PAP2) family protein
BnaA01g12350D AT4G22640 Fatty acid elongation and wax biosynthesis Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein