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Table 4 Candidate genes screened by combining GWAS and RNA sequencing (CQ24/46)

From: Identification of candidate genes controlling oil content by combination of genome-wide association and transcriptome analysis in the oilseed crop Brassica napus

Code Candidate genes At orthologs Location gDNA Length (bp) CDS length (bp) Exon number Function description
X1 BnaA01g11960D AT4G22160 chrA01:6001930–6002661 732 480 2 Unknown protein
X2 BnaA01g12400D AT4G22730 chrA01:6194675–6197498 2824 2064 3 Leucine-rich repeat protein kinase family protein
X3 BnaA01g12530D AT4G22880 chrA01:6294325–6295940 1616 1077 2 Leucoanthocyanidin dioxygenase (LDOX)
X4 BnaA01g12540D AT4G22890 chrA01:6297451–6299173 1723 960 9 PGR5-LIKE A
X5 BnaA01g13030D AT4G23370 chrA01:6518736–6520647 1912 1161 8 Unknown protein
X6 BnaA03g36210D AT3G21320 chrA03:17700381–17702480 2100 1473 5 EARLY FLOWERING protein
X7 BnaA03g36510D AT3G29040 chrA03:17886150–17887585 1436 744 3 Domain of unknown function (DUF26)
X8 BnaA03g36520D AT3G22160 chrA03:17918805–17921792 2988 264 2 JASMONATE-ASSOCIATED VQ MOTIF GENE 1, JAV1
X9 BnaA03g36540D AT4G11850 chrA03:17925272–17933870 8599 4398 15 Phospholipase D gamma 1 (PLDGAMMA1)
X10 BnaA03g36620D AT3G22370 chrA03:17988398–17992403 4006 1065 6 Alternative oxidase 1A (AOX1A)
X11 BnaA03g37000D AT3G23180 chrA03:18246929–18248163 1235 564 6 HR-like lesion-inducing protein-related
X12 BnaA03g37060D AT1G51400 chrA03:18277785–18278767 983 438 3 Photosystem II 5 kD protein
X13 BnaC05g10400D AT1G14130 chrC05:5962733–5963804 1072 915 2 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
X14 BnaC05g10690D AT1G14450 chrC05:6142756–6148159 5404 225 1 NADH dehydrogenase (ubiquinone)s
X15 BnaC05g10700D AT1G51350 chrC05:6148823–6151086 2264 312 7 ARM repeat superfamily protein
X16 BnaC05g10710D AT5G07300 chrC05:6151155–6152461 1307 357 8 Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins