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Table 4 Candidate genes screened by combining GWAS and RNA sequencing (CQ24/46)

From: Identification of candidate genes controlling oil content by combination of genome-wide association and transcriptome analysis in the oilseed crop Brassica napus

Code

Candidate genes

At orthologs

Location

gDNA Length (bp)

CDS length (bp)

Exon number

Function description

X1

BnaA01g11960D

AT4G22160

chrA01:6001930–6002661

732

480

2

Unknown protein

X2

BnaA01g12400D

AT4G22730

chrA01:6194675–6197498

2824

2064

3

Leucine-rich repeat protein kinase family protein

X3

BnaA01g12530D

AT4G22880

chrA01:6294325–6295940

1616

1077

2

Leucoanthocyanidin dioxygenase (LDOX)

X4

BnaA01g12540D

AT4G22890

chrA01:6297451–6299173

1723

960

9

PGR5-LIKE A

X5

BnaA01g13030D

AT4G23370

chrA01:6518736–6520647

1912

1161

8

Unknown protein

X6

BnaA03g36210D

AT3G21320

chrA03:17700381–17702480

2100

1473

5

EARLY FLOWERING protein

X7

BnaA03g36510D

AT3G29040

chrA03:17886150–17887585

1436

744

3

Domain of unknown function (DUF26)

X8

BnaA03g36520D

AT3G22160

chrA03:17918805–17921792

2988

264

2

JASMONATE-ASSOCIATED VQ MOTIF GENE 1, JAV1

X9

BnaA03g36540D

AT4G11850

chrA03:17925272–17933870

8599

4398

15

Phospholipase D gamma 1 (PLDGAMMA1)

X10

BnaA03g36620D

AT3G22370

chrA03:17988398–17992403

4006

1065

6

Alternative oxidase 1A (AOX1A)

X11

BnaA03g37000D

AT3G23180

chrA03:18246929–18248163

1235

564

6

HR-like lesion-inducing protein-related

X12

BnaA03g37060D

AT1G51400

chrA03:18277785–18278767

983

438

3

Photosystem II 5 kD protein

X13

BnaC05g10400D

AT1G14130

chrC05:5962733–5963804

1072

915

2

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

X14

BnaC05g10690D

AT1G14450

chrC05:6142756–6148159

5404

225

1

NADH dehydrogenase (ubiquinone)s

X15

BnaC05g10700D

AT1G51350

chrC05:6148823–6151086

2264

312

7

ARM repeat superfamily protein

X16

BnaC05g10710D

AT5G07300

chrC05:6151155–6152461

1307

357

8

Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins