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Table 5 Candidate genes screened by combining GWAS and RNA sequencing (CQ52/46)

From: Identification of candidate genes controlling oil content by combination of genome-wide association and transcriptome analysis in the oilseed crop Brassica napus

Code Genes in confidence interval At orthologs Location gDNA length (bp) CDS length (bp) Exon number Function description
Z1 BnaC05g10690D AT1G14450 chrC05:6142756–6148159 5404 225 1 NADH dehydrogenase (ubiquinone)s
Z2 BnaA03g37070D AT3G23410 chrA03:18280209–18283825 3617 2166 3 Fatty alcohol oxidase 3 (FAO3)
Z3 BnaA01g12270D AT4G22530 chrA01:6118512–6120375 1864 786 2 S-Adenosyl-l-methionine-dependent methyltransferases superfamily protein
Z4 BnaA01g12520D AT4G22860 chrA01:6288006–6294204 6199 2358 23 Cell cycle regulated microtubule-associated protein
Z5 BnaA01g12870D AT4G23060 chrA01:6443916–6447139 3224 1467 5 IQ-domain 22 (IQD22)
Z6 BnaA03g36230D AT3G21330 chrA03:17713723–17714730 1008 1008 1 Basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Z7 BnaA03g36910D AT3G22960 chrA03:18136808–18141526 4719 1728 7 PKP-ALPHA
Z8 BnaC07g34230D AT4G17220 chrC07:37116980–37119308 2329 1512 10 Microtubule-associated proteins 70-5 (MAP70-5)
Z9 BnaC05g10700D AT1G51350 chrC05:6148823–6151086 2264 312 7 ARM repeat superfamily protein
Z10 BnaC05g10710D AT5G07300 chrC05:6151155–6152461 1307 357 8 Putative copine, regulates calcium signalling, BONZAI (AtBON2)
Z11 BnaC07g34010D AT4G16980 chrC07:36973813–36974752 940 513 1 Arabinogalactan-protein family
Z12 BnaC07g34060D AT4G17050 chrC07:37001028–37003893 2866 903 13 Ureidoglycine aminohydrolase (UGLYAH)
Z13 BnaA03g37060D AT1G51400 chrA03:18277785–18278767 983 438 3 Photosystem II 5 kD protein
Z14 BnaA01g12040D AT4G22220 chrA01:6038697–6039866 1170 480 3 ISU1
Z15 BnaA01g12370D AT4G22680 chrA01:6178215–6179541 1327 804 2 Myb domain protein 85 (MYB85)
Z16 BnaC07g34050D AT4G17040 chrC07:36997388–37000753 3366 921 7 CLP protease R subunit 4 (CLPR4)
Z17 BnaA01g12340D AT4G22620 chrA01:6165884–6166560 677 483 1 SAUR-like auxin-responsive protein family
Z18 BnaC05g10380D AT1G14100 chrC05:5938383–5940030 1648 1578 2 Fucosyltransferase 8 (FUT8)
Z19 BnaA03g36300D AT3G21460 chrA03:17739884–17740442 559 309 1 Glutaredoxin family protein
Z20 BnaA03g36620D AT3G22370 chrA03:17988398–17992403 4006 1065 6 Alternative oxidase 1A (AOX1A)
Z21 BnaA01g12320D AT4G22590 chrA01:6150232–6152082 1851 1128 7 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Z22 BnaA01g12930D AT4G23180 chrA01:6474955–6477798 2844 2007 7 Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (CRK10)
Z23 BnaC05g10460D AT1G14200 chrC05:6006999–6010819 3821 1059 4 RING/U-box superfamily protein
Z24 BnaC07g34250D AT4G17260 chrC07:37125045–37126398 1354 1053 2 Lactate/malate dehydrogenase family protein
Z25 BnaC07g34450D AT4G17615 chrC07:37207760–37210093 2334 642 8 Calcineurin B-like protein 1 (CBL1)
Z26 BnaC07g34510D AT4G17670 chrC07:37221343–37222462 1120 507 2 Protein of unknown function (DUF581)
Z27 BnaA03g36680D AT4G30090 chrA03:18023844–18026170 2327 831 10 Embryo defective 1353 (emb1353)
Z28 BnaC05g10680D AT1G14440 chrC05:6131908–6132828 921 921 1 Homeobox protein 31 (HB31)
Z29 BnaA01g11920D AT4G22120 chrA01:5970386–5973641 3256 2088 8 ERD (early-responsive to dehydration stress) family protein
Z30 BnaA01g13030D AT4G23370 chrA01:6518736–6520647 1912 1161 8 Unknown protein
Z31 BnaA03g36510D AT3G29040 chrA03:17886150–17887585 1436 744 3 Domain of unknown function (DUF26)
Z32 BnaC05g10510D AT1G14280 chrC05:6028460–6029815 1356 1254 1 Phytochrome kinase substrate 2 (PKS2)