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Table 3 Relative abundance of top 20 GH family proteins observed in the rice YSB gut consortium

From: Mining the biomass deconstructing capabilities of rice yellow stem borer symbionts

Relative abundance rank

Total emPAI scorea

Family

Bound fraction

Supernatant

Substrate

1

12.86

GH10

Yes

Yes

Hemicellulose deconstruction

2

10.67

GH9

Yes

Yes

Cellulose deconstruction

3

8.24

GH48

Yes

No

Cellulose deconstruction

4

4.38

GH109

Yes

Yes

Glycoprotein deconstruction

5

4.21

GH5

Yes

No

Cellulose and hemicellulose deconstruction

6

3.58

GH6

Yes

No

Cellulose deconstruction

7

1.28

GH74

Yes

No

Cellulose and hemicellulose deconstruction

8

1.04

GH94

Yes

No

Starch deconstruction

9

0.93

GH3

Yes

No

Cellulose and hemicellulose deconstruction

10

0.65

GH13

Yes

No

Starch deconstruction

11

0.64

GH120

Yes

No

Hemicellulose deconstruction

12

0.54

GH11

Yes

No

Hemicellulose deconstruction

13

0.37

GH15

Yes

No

Starch deconstruction

14

0.26

GH26

Yes

No

Hemicellulose deconstruction

15

0.24

GH39

Yes

No

Hemicellulose deconstruction

16

0.23

GH33

No

Yes

Glycoprotein deconstruction

17

0.12

GH43

Yes

No

Hemicellulose deconstruction

18

0.10

GH20

Yes

No

Peptidoglycan deconstruction

19

0.06

GH62

Yes

No

Hemicellulose deconstruction

20

0.03

GH2

Yes

No

Hemicellulose deconstruction

  1. aTotal emPAI scores are based on the sum of emPAI scores all entries for a given family of glycoside hydrolases