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Table 1 Comparison of the DEGs of carotenogenesis in C. zofingiensis and H. pluvialis under various conditions

From: Time-resolved carotenoid profiling and transcriptomic analysis reveal mechanism of carotenogenesis for astaxanthin synthesis in the oleaginous green alga Chromochloris zofingiensis

 

MEP

MVA

IPP/DMAPP to primary carotenoids

β-carotenoid to astaxanthin

Referencesa

C. zofingiensis

 Nitrogen deprivation

Up: MCS

Down: DXR

Up: AACT, HCS

Down: no

Up: LCYb

Down: PDS, ZDS, LCYe, CYP97A, CYP97C, VDE

Up: CHYb, BKT1, BKT2, AAT

Down: no

This study

 High light

Up: no

Down: no

Up: no

Down: no

Up: no

Down: ZDS, LCYe

Up: BKT1, BKT2, AAT

Down: no

[26]

 Glucose induction

Up: DXS, HDR

Down: CMK

Up: IPPI

Down: AACT

Up: LCYb

Down: PDS, ZISO, CRTISO, LCYe, CYP97A, CYP97C, ZEP, VDE, NXS

Up: CHYb, BKT1

Down: BKT2

[28]

H. pluvialis

 High light

Up: DXS, DXR, HDS, HDR

Down: no

Up: HCS

Down: no

Up: GGPPS, PSY, PDS, ZDS, LCYb

Down: no

Up: CHYb, BKT

Down: no

[36]

 High light plus nitrogen deprivation

Up: DXS, DXR, MCT, HDS, HDR

Down: no

Up: no

Down: no

Up: GGPPS, PSY, PDS, ZDS, LCYb

Down: LCYe, CYP97C

Up: CHYb, BKT

Down: no

[37]

  1. aThe DEGs were retrieved from RNA-seq data of the references. Note that there is only one time-point RNA-seq data for Gwak et al. [36], but many carotenogenic genes were verified by qPCR in a time-resolved manner